View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_low_11 (Length: 201)
Name: NF15379_low_11
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 8e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27075881 - 27075720
Alignment:
| Q |
1 |
tgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttgacacgtgcagctccgcattccttcctgctggt |
100 |
Q |
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| T |
27075881 |
tgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggt |
27075782 |
T |
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| Q |
101 |
gtcttcaatgattatgggccttatgtgatctgtaatggacatctgcttctgtttatggttca |
162 |
Q |
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| T |
27075781 |
gtcttcaatgattatgtgcctgatgagatcattaagagacatctgcttgtgtttatgtttca |
27075720 |
T |
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Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 26050872 - 26050748
Alignment:
| Q |
38 |
gatcagatttgctctcgattccaaagctttgacacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgggccttatgtgatctgtaatg |
137 |
Q |
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||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||| |
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| T |
26050872 |
gatcagatttgttctggattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttcaatgattatgtgcctgatgagatcattaaga |
26050773 |
T |
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| Q |
138 |
gacatctgcttctgtttatggttca |
162 |
Q |
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| T |
26050772 |
gacatctgcttgtgtttatgtttca |
26050748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 36610891 - 36610779
Alignment:
| Q |
6 |
tcatacctctgttgtttacgcgcattgttttggatca--gatttgctctcgattccaaagctttgacacgtgcagctccgcattccttcctgctggtgtc |
103 |
Q |
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| T |
36610891 |
tcatatctctgttgtttgcgtgtattgttttggattatagattttctctcgactccaaagctttggctcgagcagctccacattcctttctgctggtgtc |
36610792 |
T |
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| Q |
104 |
ttcaatgattatg |
116 |
Q |
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||||||||||||| |
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| T |
36610791 |
ttcaatgattatg |
36610779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 14635656 - 14635829
Alignment:
| Q |
1 |
tgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttgacacgtgcagctccgcattccttcctgctggt |
100 |
Q |
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|||| ||||||| |||||||| | || |||||||||||| ||||||||||| || |||||||||||| | ||||| ||| | ||||| || ||||||| |
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| T |
14635656 |
tgttttcatacccttgttgtttgcacgtattgttttggattagatttgctcttgactccaaagctttggctcgtgcggcttcacattcttttttgctggt |
14635755 |
T |
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| Q |
101 |
gtcttcaatgattatgggccttatgtgatctgtaatggacatctgcttctgtttatggttcattttttgcttgt |
174 |
Q |
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| T |
14635756 |
gccttcaatgtttacgtgcctgatgagatcattaagagacatatgcttgtgcttatgtttcatttgttgcttgt |
14635829 |
T |
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