View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_low_3 (Length: 403)
Name: NF15379_low_3
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 54013496 - 54013878
Alignment:
| Q |
16 |
acatttgaagtatttttcttaaacgtcatgaacaaatgggtgatttttgtaaagaggtaagacgggtgtatatataactc--gagtcggtaaaatattta |
113 |
Q |
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| T |
54013496 |
acatttgaagtatttttcttaaacgtcatgaacaaatgagtgatttttgtaaagaggtaagacgggtgtatatataactcttgagtcagtaaaatattta |
54013595 |
T |
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| Q |
114 |
ttttattattcgatttaaatacgtgaaaatgatttgttaatttgaaacagaatcataacaatgatattttgttaattatcaattattatagtgcgggtaa |
213 |
Q |
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| T |
54013596 |
ttttattattcgatttaaatacgtgaaaatgatttgttaatttgagacagaatcataacaatgatattttgttaattatcaattattatagtgcaggtaa |
54013695 |
T |
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| Q |
214 |
ccatgtagatacaagtaacaatgatttcgaaactatgagaatgctaattgggttgatatggttgaacttgaacttgaagaggattccaactctaggactg |
313 |
Q |
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| T |
54013696 |
ccatgtagatacaagtaacaatgatttcgaaactatgagaatgctaattgggttgatatggttgaacttgaacatgaagaggattccaactctagaactg |
54013795 |
T |
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| Q |
314 |
aaattcctaatgttaatcaagacaagatgctactattgagaacaagatgtcaaaagtctacaacaatattgtttctatctgtg |
396 |
Q |
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| T |
54013796 |
aaattcctaatgttaatcaagacaagatgctactattgagaacaagatgtcaagagtctacaacaatattgtttctatctgtg |
54013878 |
T |
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