View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_low_5 (Length: 318)
Name: NF15379_low_5
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 30420204 - 30419914
Alignment:
| Q |
13 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
112 |
Q |
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| T |
30420204 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
30420105 |
T |
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| Q |
113 |
gataattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
212 |
Q |
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| T |
30420104 |
gataattttacgtcaagacaaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
30420005 |
T |
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| Q |
213 |
gttaaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctt |
303 |
Q |
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| T |
30420004 |
gttaaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctt |
30419914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 30437708 - 30437423
Alignment:
| Q |
15 |
tatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttga |
114 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
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| T |
30437708 |
tatcatatggttggaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttga |
30437609 |
T |
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| Q |
115 |
taattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgt |
214 |
Q |
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| T |
30437608 |
taattttacatcaagacaaaactattgcaacacaagctcaactatttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattat |
30437509 |
T |
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| Q |
215 |
taaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttggg |
300 |
Q |
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|||||||||||| |||||||| || ||||||| |||||||||||||||||| ||| |||||| ||||||||| || |||| |||| |
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| T |
30437508 |
taaattcctacagacacaaaacattgtttttcctatggtgcttgctaatggattcattagcttaatacatgttattttatgctggg |
30437423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 30381410 - 30381124
Alignment:
| Q |
13 |
aatatcatatggttggaatatatacacaaagagcaatgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgatttt |
112 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| || ||| |||| | |||||||||| |||| ||||| |
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| T |
30381410 |
aatatcatatggttggcatatacacacaaagagccatgttggttaccacccttgttagtatacccttgtcaattatatgggcatacttagaacctatttt |
30381311 |
T |
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| Q |
113 |
gataattttacgtcaagataaaactattgcagcacaagctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgcctt |
212 |
Q |
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| | ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||| || |
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| T |
30381310 |
ggtgattttacatcaagaccaaactattgcagcacaagctcaattatttgctcgttactcaattcctagccttgctgccaatggccttcttaggtgcatt |
30381211 |
T |
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| Q |
213 |
gttaaattcctacaaacacaaaatataatttttccaatggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgg |
299 |
Q |
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||||||||| | ||||| ||||| ||| ||||||| |||||| | ||||||||| |||||| ||| ||||||| ||||||||||| |
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| T |
30381210 |
gttaaattcttgcaaactcaaaacatagtttttcccatggtgttggctaatggaatcactaccttagtacatgtccttctatgttgg |
30381124 |
T |
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