View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1537_high_3 (Length: 244)
Name: NF1537_high_3
Description: NF1537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1537_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40280242 - 40280480
Alignment:
| Q |
1 |
atttccttgtttcaatatcctttgtttcttatcaataacccttaaattcttacgtgattaattagcactttaagctttgaagaacatcaatttataatga |
100 |
Q |
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| T |
40280242 |
atttccttgtttcaatatcctttgtttcttatcaataacccttaaattcttaagtgattaattatcactttaagcttttaagaacatcaatttagaatga |
40280341 |
T |
|
| Q |
101 |
acgcatggtaannnnnnnatatgttattgcatcacgaagataagcaagaagaataaaaccctaactataatagcttaccttgcaagtaactagcttagat |
200 |
Q |
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| T |
40280342 |
acgcatggtaatttttttatatgttattgcatcaggaagataagcaagaagaataaaaccctaactataatagcttaccttgcaagtaactagcttagat |
40280441 |
T |
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| Q |
201 |
tagttttagttagttactgagtaatgttcctatgcttct |
239 |
Q |
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| T |
40280442 |
tagttttagttagttactgagtaatgttcctatgcttct |
40280480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 23872152 - 23872054
Alignment:
| Q |
123 |
gttattgcatcacgaagataagcaagaagaataaaaccctaactataatagcttaccttgcaagtaactagcttagattagttttagttagttactgagt |
222 |
Q |
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| T |
23872152 |
gttattgcatcacgaagataagcaagaggaatgaagctctaactgtaatagcttgccgtacaagtaactagcttagattag-tttagttagttactgagt |
23872054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 8368506 - 8368389
Alignment:
| Q |
124 |
ttattgcatcacgaagataagcaagaagaataaaaccctaac-tataatagcttaccttgcaagtaactagcttagattagttt-tagttagttactgag |
221 |
Q |
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| T |
8368506 |
ttattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgtctggctagtaactagcttagaatagtttatagttagttacagag |
8368407 |
T |
|
| Q |
222 |
taatgttcctatgcttct |
239 |
Q |
| |
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| || |||||||||||| |
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| T |
8368406 |
ttattatcctatgcttct |
8368389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 18314473 - 18314418
Alignment:
| Q |
183 |
caagtaactagcttagattagttttagttagttactgagtaatgttcctatgcttct |
239 |
Q |
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| T |
18314473 |
caagtaactagcttagaatag-tttagttagttacagagttattatcctatgcttct |
18314418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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