View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15380_high_3 (Length: 385)

Name: NF15380_high_3
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15380_high_3
NF15380_high_3
[»] chr1 (2 HSPs)
chr1 (23-370)||(8713322-8713671)
chr1 (72-370)||(8726055-8726352)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 8713671 - 8713322
Alignment:
Q  23 ccaactgcactatgtagcctatcctgcaatgac-tccacccgcgcagacacatatattcaaaggaatgaaagtgctccatatccgcctaactgctgccac 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8713671 ccaactgcactatgtagcctatcctgcaatgacctccacccgcgcagacacatatattcaaaggaatgaaagtgctccatatccgcctaactgctgccac 8713572  T
Q  122 aaattagtcatcgtattcagccgaacataatagatttgacaactccaagtaccaatctttaacagaaaaaccagccgctgcatcaggcagccacctgaaa 221  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8713571 aaattagtcatcgttatcagccgaacataatagatttgacaactccaagtagcaatctttaacagaaaaaccagccgctgcatcaggcagccacctgaaa 8713472  T
Q  222 gtatctggcacatcaaactgtggctgcaactgcg-aaattagctgatgcaaaaccgaatcatcaaccctctcttcttcttgcagaattctggtccagttt 320  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||    
T  8713471 gtatctggcacatcaaactgtggctgcaactgcgaaaattagctgatgcaaaaccggattatcaaccctctcttcttcttgcagaattctagtccagttt 8713372  T
Q  321 ccctgtttccttctttttggattcctcgatcttttcgaatttaattttac 370  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8713371 ccctatttccttctttttggattcctcgatcttttcgaatttaattttac 8713322  T

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Target: chr1; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 72 - 370
Target Start/End: Complemental strand, 8726352 - 8726055
Alignment:
Q  72 catatattcaaaggaatgaaagtgctccatatccgcctaactgctgccacaaattagtcatcgtattcagccgaacataatagatttgacaactccaagt 171  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||| || |||| ||||||||||||||||| |    
T  8726352 catatattcgaaggaatgaaagtgctacatatccgccaaactgctgcaacaaattagtcatcctattcagccaaatataacagatttgacaactccaaat 8726253  T
Q  172 accaatctttaacagaaaaaccagccgctgcatcaggcagccacctgaaagtatctggcacatcaaactgtggctgcaactgcgaaattagctgatgcaa 271  Q
    |  || |||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8726252 agaaacctttaacataaaaatcagcctctgcatcaggcagccacctgaatgtatctggcacatcaaactttggctgcaactgcgaaattagctgatgcaa 8726153  T
Q  272 aaccgaatcatcaaccctctcttcttcttgcagaattctggtccagtttccctgtttccttctttttggattcctcgatcttttcgaatttaattttac 370  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||  |  ||||||||  |||||||||||||| ||||||    
T  8726152 aaccgcatcatcaaccctctcttcgtcttgcagaattctggtccagtttccctatttctttctcatgtgattcctc-ttcttttcgaatttacttttac 8726055  T

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