View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15380_high_5 (Length: 321)
Name: NF15380_high_5
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15380_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 45105621 - 45105911
Alignment:
| Q |
19 |
ggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttcaagaacgtgtgaaggagttagaggagcagaacaagaggaacaaagaatca |
118 |
Q |
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| T |
45105621 |
ggacaagacctctatacttggtgaagcaatcaattatgtgaaaatacttcaagaacgtgtgaaggagttagaggaacggaacaagaggaacaacgaatca |
45105720 |
T |
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| Q |
119 |
ccaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactccctgatg |
218 |
Q |
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| T |
45105721 |
acaataatccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactgcctgatg |
45105820 |
T |
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| Q |
219 |
tcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatattgaatttgcttga |
309 |
Q |
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| T |
45105821 |
tcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttga |
45105911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 45131917 - 45132185
Alignment:
| Q |
19 |
ggacaagacctctatacttggtgaagcaatcaattatgtgaaactacttcaagaacgtgtgaaggagttagaggagcagaacaagaggaacaaagaatca |
118 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||| | |||||||||| |
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| T |
45131917 |
ggacaagaactatatacttggtgaagcaatcagttatgtgaaactacttcaagaacgtgtgaaggagctagaggatcaaaacaagaatagcaaagaatca |
45132016 |
T |
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| Q |
119 |
ccaataa---tccacaaaagtgatttgtgttcaaatgaacataacaacacctcaaatgacacaaattctgatcaggattgttgtaaatcatcactccctg |
215 |
Q |
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| T |
45132017 |
acaataattctcaagaaaactgatatgtgtgtaagtgaagat---accacct---------caaactctgatcaggattgctgcaaatcaccactctttg |
45132104 |
T |
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| Q |
216 |
atgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtaagaaggaaaatggcattgagatcaaaatat |
296 |
Q |
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|||| ||||||||| | |||||||||| ||||||||| |||| || ||| |||||||||||| ||||||||||||||||| |
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| T |
45132105 |
atgttaaagcaagaataatggaaaatgaggtactcattcagatgcactgtgagaaggaaaatgacattgagatcaaaatat |
45132185 |
T |
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