View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15380_high_8 (Length: 238)

Name: NF15380_high_8
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15380_high_8
NF15380_high_8
[»] chr4 (8 HSPs)
chr4 (29-221)||(13130730-13130922)
chr4 (29-220)||(25097349-25097546)
chr4 (63-215)||(12608991-12609142)
chr4 (29-150)||(17110015-17110145)
chr4 (64-124)||(11933928-11933988)
chr4 (144-196)||(31994659-31994711)
chr4 (49-99)||(22216123-22216173)
chr4 (144-198)||(31932888-31932942)
[»] chr6 (5 HSPs)
chr6 (24-221)||(21844578-21844783)
chr6 (74-167)||(22570936-22571029)
chr6 (63-220)||(9870137-9870300)
chr6 (29-221)||(23843575-23843775)
chr6 (144-213)||(22525563-22525632)
[»] chr3 (12 HSPs)
chr3 (24-222)||(34275358-34275562)
chr3 (24-221)||(12770109-12770305)
chr3 (44-198)||(19913610-19913769)
chr3 (73-221)||(19578085-19578239)
chr3 (102-221)||(8766752-8766871)
chr3 (102-221)||(8771635-8771754)
chr3 (48-221)||(13586621-13586801)
chr3 (102-221)||(19166160-19166279)
chr3 (30-211)||(17142372-17142552)
chr3 (121-166)||(8878748-8878793)
chr3 (132-221)||(16227158-16227247)
chr3 (24-101)||(19166327-19166404)
[»] chr2 (7 HSPs)
chr2 (24-221)||(28922534-28922737)
chr2 (48-221)||(25923677-25923856)
chr2 (63-221)||(25533264-25533425)
chr2 (63-221)||(23008885-23009042)
chr2 (24-182)||(16815797-16815951)
chr2 (24-182)||(16854954-16855108)
chr2 (63-100)||(22565625-22565662)
[»] chr8 (9 HSPs)
chr8 (63-197)||(29761732-29761866)
chr8 (24-197)||(21320576-21320749)
chr8 (24-211)||(24721213-24721405)
chr8 (29-166)||(18571542-18571685)
chr8 (63-222)||(25231721-25231886)
chr8 (24-221)||(26828627-26828831)
chr8 (140-198)||(17964273-17964331)
chr8 (27-103)||(17099185-17099261)
chr8 (140-196)||(28857720-28857776)
[»] chr7 (11 HSPs)
chr7 (29-221)||(13251634-13251832)
chr7 (29-221)||(19202487-19202684)
chr7 (24-217)||(39269125-39269324)
chr7 (48-221)||(1586590-1586761)
chr7 (111-221)||(8315945-8316055)
chr7 (63-221)||(20578530-20578680)
chr7 (144-197)||(19155372-19155425)
chr7 (144-197)||(20754771-20754824)
chr7 (29-100)||(19155459-19155530)
chr7 (29-100)||(20754858-20754929)
chr7 (170-211)||(6038197-6038238)
[»] chr5 (11 HSPs)
chr5 (24-221)||(24319429-24319634)
chr5 (29-221)||(9834510-9834708)
chr5 (63-221)||(31598948-31599108)
chr5 (63-221)||(19054175-19054338)
chr5 (63-221)||(31213566-31213724)
chr5 (111-221)||(9826386-9826496)
chr5 (29-151)||(20547364-20547492)
chr5 (141-197)||(24263211-24263267)
chr5 (49-100)||(25571440-25571491)
chr5 (42-100)||(23772050-23772108)
chr5 (72-132)||(34489951-34490012)
[»] chr1 (1 HSPs)
chr1 (29-163)||(18828403-18828543)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 13130922 - 13130730
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaac 128  Q
    ||||||||| || |||| ||||||||||| |   ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  13130922 ataacctaaccgatcgtccgtaaagaacggccgcaaattcaagcaaaaatagcattcatttggaacacacataattgaaaatatttaagtatctaacaac 13130823  T
Q  129 ctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||||||||||||||| || ||||||||||||| ||||||    
T  13130822 ctagaatggatatggaaatattgggctctaaatctcaccggttatgatattcggaaaagagatggtgatcttttaagtaccttcacgagcaag 13130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 25097349 - 25097546
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatct 122  Q
    |||||||||||| |||| |||||||||||||   || |||||||||||||| |||||||||||||||||||||||      |||||||||||||||||||    
T  25097349 ataacctaatcgatcgtccgtaaagaacgaccgtaagttcaagcaaaaataacattcatatggaacactcataatatgtattggaaatatttaagtatct 25097448  T
Q  123 aacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaa 220  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  ||||| || ||  |||||||  ||||||| | |||||||||||||||||||    
T  25097449 aacatcctagaatggatatggaaatatttggctctgaatctcaccgtttatgctaatcgaaaaagagtaggtgattgtataagtaccttcactagcaa 25097546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 12608991 - 12609142
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||  |||||| |||||||| ||||    
T  12608991 aaattcaagcaaaaatagcattcatatggaacactcataattgaaaatatttaagtatctaacaatttagaatggataacgaaata-ttggctctgaatc 12609089  T
Q  163 tcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcact 215  Q
    ||| |  ||||  |||||||||||||||||||||| || ||||||||||||||    
T  12609090 tcatcggttattctattcagaaaagagatggtgatcttataagtaccttcact 12609142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 17110015 - 17110145
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcata-----attggaaatatttaagtatct- 122  Q
    ||||||||| || || | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||     ||||||| |||||||||||||     
T  17110015 ataacctaaccgatcatccgtaaagaacgacaacaaattcaagcaaaaatagcattcatatggaactctcatatatatattggaagtatttaagtatcta 17110114  T
Q  123 ---aacaacctagaatggatatggaaatatt 150  Q
       |||||||||||||||||||| |||||||    
T  17110115 acaaacaacctagaatggatatgaaaatatt 17110145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 11933928 - 11933988
Alignment:
Q  64 aattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaa 124  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  11933928 aattcaagcaaaaataacattcatatggaacactcataattgaaaatatttaagtatctaa 11933988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 31994659 - 31994711
Alignment:
Q  144 aaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtga 196  Q
    ||||||||||||| || ||||||||||||||||||  ||||||||||||||||    
T  31994659 aaatatttggctcaaattctcaccaattatgttatagagaaaagagatggtga 31994711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 22216173 - 22216123
Alignment:
Q  49 taaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactca 99  Q
    |||||||||||  ||||||| ||||||||||||||||||||| ||||||||    
T  22216173 taaagaacgacggaaaattcgagcaaaaatagcattcatatgaaacactca 22216123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 31932888 - 31932942
Alignment:
Q  144 aaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgatt 198  Q
    ||||||||||| | || ||||||||||||||||||  |||||||||| |||||||    
T  31932888 aaatatttggcacaaattctcaccaattatgttatagagaaaagagacggtgatt 31932942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 21844783 - 21844578
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat--------tggaaatattta 115  Q
    ||||||||||||||||| |||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  21844783 gtataataacctaatcgatcgtccgtaaagaacggccataaattcaagcaaaaatagcattcatatggaacactcataatatgtatattggaaatattta 21844684  T
Q  116 agtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcact 215  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||| |||||||  | |||||||||| |||    
T  21844683 tgtatctaacaacctagaatggatatggaaatatttggctctgaatctcaccagttatgctattaagaaaagagttggtgatcctataagtacctttact 21844584  T
Q  216 agcaag 221  Q
    ||||||    
T  21844583 agcaag 21844578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 22570936 - 22571029
Alignment:
Q  74 aaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcacc 167  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22570936 aaaatagcattcatatggaacactcataatggaaagtatttaagtatctaacaacctagaatggatatggaaatatatggctctaaatctcacc 22571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 9870300 - 9870137
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctc 156  Q
    |||||| ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  9870300 aaattcgagcaaaaatagcattcatatggaacactcataatatatattggaaatatttaagtatctaacaacctagaatggatatgaaaatatttggcta 9870201  T
Q  157 taaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaa 220  Q
    | |||||||||  ||||| ||||  ||||| |  | |||||  | |||||||||||||||||||    
T  9870200 tgaatctcaccggttatgctatttggaaaacaatttgtgatcctataagtaccttcactagcaa 9870137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 23843775 - 23843575
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattgg--------aaatatttaagtat 120  Q
    ||||||||| || ||||| ||||||||| ||   |||||||||||||| |||||||||||||||||| |||||||  |        ||||||||||||||    
T  23843775 ataacctaaccgatcgtttgtaaagaacaaccgcaaattcaagcaaaagtagcattcatatggaacagtcataatatgtatattataaatatttaagtat 23843676  T
Q  121 ctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaa 220  Q
    ||  ||||||||||||||||||||||||||||| | | ||| |||| | ||||| ||||| ||||||||  ||||||| | |||  |||||| |||||||    
T  23843675 cttgcaacctagaatggatatggaaatatttggttatgaatatcactagttatgctattcggaaaagagtaggtgattctataaacaccttccctagcaa 23843576  T
Q  221 g 221  Q
    |    
T  23843575 g 23843575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 22525632 - 22525563
Alignment:
Q  144 aaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttca 213  Q
    |||||||||||| ||||||||||  |||||| ||||||||||||||||||||||| | ||||||||||||    
T  22525632 aaatatttggctataaatctcactgattatgctattcagaaaagagatggtgattatataagtaccttca 22525563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 34275562 - 34275358
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcat------aattggaaatatttaag 117  Q
    ||||||||||||||||  |||| ||||||||| |||   ||||||||||||||||||||||||||||||||||||||      |||||||| | ||||||    
T  34275562 gtataataacctaatcaatcgtccgtaaagaatgaccgcaaattcaagcaaaaatagcattcatatggaacactcatgatataaattggaagtttttaag 34275463  T
Q  118 tatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactag 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| |||||||||||||||||||||| || ||||||| || | |||    
T  34275462 tatctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgctattcagaaaagagatggtgatcttataagtacatttattag 34275363  T
Q  218 caagt 222  Q
    |||||    
T  34275362 caagt 34275358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 12770305 - 12770109
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatcta 123  Q
    |||||||||||||| || | || |||||||||||||   |||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12770305 gtataataacctaaccgattgtccgtaaagaacgaccgcaaattcaaacagaaatagcattcatatggaacactcataattagaaatatttaagtatcta 12770206  T
Q  124 acaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    | |||||||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||| ||||||| || || ||||||||||||||| ||||    
T  12770205 agaacctagaatggatatggaaatatttggctctgaatctcaccggttatgctattttgaaaatagatggt-atcttataagtaccttcactaacaag 12770109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 19913610 - 19913769
Alignment:
Q  44 gttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat-----tggaaatatttaagtatctaacaacctagaatgga 138  Q
    ||||||||||||||||   ||||||||||||||||| |||| |||||||||||| | |||     |  || |||||||||||||||||||||||||||||    
T  19913610 gttcgtaaagaacgaccgcaaattcaagcaaaaataacatttatatggaacacttacaatatatatttaagtatttaagtatctaacaacctagaatgga 19913709  T
Q  139 tatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgatt 198  Q
    ||||||||||||||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  19913710 tatggaaatatttggctctgaatctcaccggttatgctattcagaaaagagatggtgatt 19913769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 19578239 - 19578085
Alignment:
Q  73 aaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcac 166  Q
    ||||||| |||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  19578239 aaaaataacattcatatggaacactcataatatgtattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctataaatttcac 19578140  T
Q  167 caattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    | |||||| ||||| ||||||||  ||||||  | | |||| |||||||||||||    
T  19578139 cgattatgatattcggaaaagagtaggtgatactatgagtatcttcactagcaag 19578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 8766752 - 8766871
Alignment:
Q  102 attggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||  ||||||||||||| |||||||  |     
T  8766752 attggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgcaattcagaaaagagttggtgatccta 8766851  T
Q  202 taagtaccttcactagcaag 221  Q
    ||| |||||| |||||||||    
T  8766852 taattacctttactagcaag 8766871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 8771635 - 8771754
Alignment:
Q  102 attggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttg 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||  |||||  ||||||||||||| |||||||  |     
T  8771635 attggaaatatttaagtatctaacaacttagaatggatatggaaatatttggctctgaatctcaccggttatgcaattcagaaaagagttggtgatccta 8771734  T
Q  202 taagtaccttcactagcaag 221  Q
    ||| |||||| |||||||||    
T  8771735 taattacctttactagcaag 8771754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 13586621 - 13586801
Alignment:
Q  48 gtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatat 141  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| |||||||      | |||||| |||||||||||| ||||||||||||||||    
T  13586621 gtaaagaacggctacaaattcaagcaaaaatagcattcatatggaacattcataatatgtatttgaaatacttaagtatctaataacctagaatggatat 13586720  T
Q  142 ggaaatatttggctctaaatctcaccaat-tatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    | |||||||||||||| || |||| || | |||| |||||||||||||| || ||||  | ||||||| || |||||||||    
T  13586721 gaaaatatttggctctgaacctcatcagtatatgctattcagaaaagagttgttgatcctataagtacttttactagcaag 13586801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 19166279 - 19166160
Alignment:
Q  102 attggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttg 201  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  || || |||||| ||||||||||| |||  |     
T  19166279 attggaattatttaagtatctaacaacctagaatggatatggaaatatttggctatgaatctcaccggttgtgctattcataaaagagatggcgatccta 19166180  T
Q  202 taagtaccttcactagcaag 221  Q
    ||||||||||||| ||||||    
T  19166179 taagtaccttcacgagcaag 19166160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 17142372 - 17142552
Alignment:
Q  30 taacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacc 129  Q
    |||| |||||| |||| ||||||||| ||| | |||||| |||||||||||||||||||||||||||||||| | | ||  ||||||||| |||||||||    
T  17142372 taacataatcgatcgtccgtaaagaatgaccacaaattcgagcaaaaatagcattcatatggaacactcatagtagaaagaatttaagtacctaacaacc 17142471  T
Q  130 tagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtacctt 211  Q
    ||| ||  || || ||||||||| ||| |||||||| |  ||||| |||| |||||| |||||||||| || ||||||||||    
T  17142472 taggatatat-tgaaaatatttgactccaaatctcagcggttatgctatttagaaaaaagatggtgatcttataagtacctt 17142552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 8878793 - 8878748
Alignment:
Q  121 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8878793 ctaacaacctagaatggatatggaaatatttggctctaaatctcac 8878748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 16227158 - 16227247
Alignment:
Q  132 gaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    ||||||||||| ||||||||| |||||||||||||   ||||| |||||||||||||||||||| |  | ||||||||||||| ||||||    
T  16227158 gaatggatatgaaaatatttgactctaaatctcactggttatgctattcagaaaagagatggtggtcctataagtaccttcacaagcaag 16227247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 19166404 - 19166327
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcata 101  Q
    |||||||||||||| || ||||  |||||||||||| | ||||||||| ||||||||  |||||||||||||||||||    
T  19166404 gtataataacctaaccgatcgtctgtaaagaacgaccacaaattcaagtaaaaatagtgttcatatggaacactcata 19166327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 28922534 - 28922737
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaag 117  Q
    ||||||||||||||||| |||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||      | ||| ||||||||    
T  28922534 gtataataacctaatcgatcgtccgtaaagaacgaccgtaaattcaagcaaaaatagcattcatatggaacactcataatgtatattagaagtatttaag 28922633  T
Q  118 tatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactag 217  Q
    ||| |||||||||| ||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||  | ||||||| || |||||    
T  28922634 tatataacaacctataatggatatggaaatatttggctttgaatctcaccagttatgctattcagaaaagagatggtgatcctataagtacatttactag 28922733  T
Q  218 caag 221  Q
    ||||    
T  28922734 caag 28922737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 25923677 - 25923856
Alignment:
Q  48 gtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatat 141  Q
    |||||||||| |  |||||||||||||||||| |||||||||||||||||||||||      | ||||||||||||||||||||||||||||||||||||    
T  25923677 gtaaagaacggccgaaaattcaagcaaaaataacattcatatggaacactcataatatgatttagaaatatttaagtatctaacaacctagaatggatat 25923776  T
Q  142 ggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    | ||| |||||||||| |||||||||  ||||| ||||  ||||||||  ||||||| | ||||||||||||||||||||    
T  25923777 gaaaaaatttggctctgaatctcaccggttatgctatttggaaaagagtaggtgattctataagtaccttcactagcaag 25923856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 25533264 - 25533425
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctc 156  Q
    ||||||||||||||||| |||||||||||||||||||||||      ||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  25533264 aaattcaagcaaaaataacattcatatggaacactcataatataaattggaagtatttaagtatctaacaacatataatggatatggaaatatttggctc 25533363  T
Q  157 taaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    | |||||||||  |||||||   |  |||||||  ||||||| | ||||||||||||||||||||    
T  25533364 tgaatctcaccggttatgtt---cgaaaaagagtaggtgattctataagtaccttcactagcaag 25533425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 23009042 - 23008885
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatc 162  Q
    |||||| |||||||||||||||| |||  |||||||||||| |  |  ||||||||||||||||| |||||||| || |||||||||||| |||||||||    
T  23009042 aaattcgagcaaaaatagcattcgtataaaacactcataatagacagaatttaagtatctaacaatctagaatgaat-tggaaatatttgactctaaatc 23008944  T
Q  163 tcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    ||| |  ||||| |||||| ||||||||| |||||  | |||||||||||| |||||||    
T  23008943 tcaacggttatgctattcataaaagagatagtgatcctataagtaccttcagtagcaag 23008885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 16815797 - 16815951
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatcta 123  Q
    |||| |||| |||| || |||| ||||||||||| |   |||||| |||||||||| |||||||||||| |||||||||| | ||| ||||| | |        
T  16815797 gtattataatctaaccgatcgtccgtaaagaacggccgcaaattcgagcaaaaataacattcatatggagcactcataatggaaaaaatttatgaa---- 16815892  T
Q  124 acaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcag 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||    
T  16815893 acaacctagaatggatatgaaaatatttggctctaaatctcaccggttatgctattcag 16815951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 16854954 - 16855108
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatcta 123  Q
    |||| |||| |||| || |||| ||||||||||| |   |||||| |||||||||| |||||||||||| |||||||||| | ||| ||||| | |        
T  16854954 gtattataatctaaccgatcgtccgtaaagaacggccgcaaattcgagcaaaaataacattcatatggagcactcataatggaaaaaatttatgaa---- 16855049  T
Q  124 acaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcag 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||| |||||||    
T  16855050 acaacctagaatggatatgaaaatatttggctctaaatctcaccggttatgctattcag 16855108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 22565662 - 22565625
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcat 100  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  22565662 aaattcaagcaaaaataacattcatttggaacactcat 22565625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 29761866 - 29761732
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatc 162  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29761866 aaattcaagtaaaaataacattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaactatttggctctgaatc 29761767  T
Q  163 tcaccaattatgttattcagaaaagagatggtgat 197  Q
    ||| || ||||||||||||||||||||||| ||||    
T  29761766 tcatcatttatgttattcagaaaagagatgatgat 29761732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 21320576 - 21320749
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatcta 123  Q
    |||||||||||||| || || | |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21320576 gtataataacctaaccgatcatccgtaaagaacgacctcaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttatgtatcta 21320675  T
Q  124 acaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgat 197  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||  ||||| |||||  |||||| ||||||||    
T  21320676 acaaactagaatggatatggaaatatttcgctctgaatctcaccggttatgctattcgaaaaagatatggtgat 21320749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 24721405 - 24721213
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat-----tggaaatatttaagt 118  Q
    |||||||||||||| || |||| |||||||||||      ||||||||||||| ||||||||||||  ||||||||||||     | |||||||||||||    
T  24721405 gtataataacctaaccgatcgtccgtaaagaacggtcgctaattcaagcaaaagtagcattcatataaaacactcataatatgtattgaaatatttaagt 24721306  T
Q  119 atctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtacctt 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| |||||||||||||| |||||||  | ||||||||||    
T  24721305 atctaacaacctagaatggatatggaaatatttggctctgaatctcaccggttatgctattcagaaaagagttggtgatcctataagtacctt 24721213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 18571542 - 18571685
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatct 122  Q
    |||||||||||| |||| | ||||||||  |   ||||||||| ||||||||| |||||||||||||||||||||      |||||||||||||||||||    
T  18571542 ataacctaatcgatcgtccataaagaacagccgcaaattcaagaaaaaatagcgttcatatggaacactcataatataaactggaaatatttaagtatct 18571641  T
Q  123 aacaacctagaatggatatggaaatatttggctctaaatctcac 166  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18571642 aacaacctagaatggatatggaaatatttggctctgaatctcac 18571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 25231721 - 25231886
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctc 156  Q
    |||||||||||| ||||||||| ||||||||||| ||||||      ||||||||||||||||||||||||||||||||| ||||||||||||||| ||     
T  25231721 aaattcaagcaataatagcattgatatggaacacacataatatatattggaaatatttaagtatctaacaacctagaatgcatatggaaatatttgtctt 25231820  T
Q  157 taaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaagt 222  Q
    | |||||||||  ||||| ||||| ||||||||  ||||||  | |||||||||||||||| ||||    
T  25231821 tgaatctcaccggttatgctattcggaaaagagtaggtgatcctataagtaccttcactagaaagt 25231886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 26828831 - 26828627
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaa-tagcattcatatggaacactcataat------tggaaatatttaa 116  Q
    |||||||||||||| || ||||  |||||||||| |  |||||||||| ||||| || |||||| ||||||||||||||||      || ||||||||||    
T  26828831 gtataataacctaaccgatcgtctgtaaagaacgtccgaaaattcaaggaaaaaataacattcacatggaacactcataatatgtattgaaaatatttaa 26828732  T
Q  117 gtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcacta 216  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||| |  ||||| |||||  | || ||  ||||||| | |||||||||||||||    
T  26828731 gtacctaacaacctagaacggatatggaaatatttggctctaaatctcatcggttatgctattcgaagaatagtaggtgattctataagtaccttcacta 26828632  T
Q  217 gcaag 221  Q
    |||||    
T  26828631 gcaag 26828627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 17964273 - 17964331
Alignment:
Q  140 atggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgatt 198  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  17964273 atggaaatatttggctcaaattctcaccagttatgttattcagaaaagagatggtgatt 17964331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 17099261 - 17099185
Alignment:
Q  27 taataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat 103  Q
    ||||||| ||| || |||| | ||||||||| | | ||||||||||||||||||||||||||| |||||||||||||    
T  17099261 taataacttaaccgatcgtccataaagaacggccacaaattcaagcaaaaatagcattcatatcgaacactcataat 17099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 28857720 - 28857776
Alignment:
Q  140 atggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtga 196  Q
    ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  28857720 atggaaatatttggctcaaaatctcaccggttatgctattcagaaaagagatggtga 28857776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 13251832 - 13251634
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatct 122  Q
    |||||||||||  |||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||    
T  13251832 ataacctaatcaatcgtccgtaaagaacgaccgcaaattcaagcaaaaatagcattcatatggaacactcataatataaattggaaatatttaagtatct 13251733  T
Q  123 aacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    ||||||||| |||| |||||||||||||||||||||||||||||   ||||| |||||  |||||||  ||||||| | |||||| |||||||||||||    
T  13251732 aacaacctataatgaatatggaaatatttggctctaaatctcacaggttatgctattcgaaaaagagtaggtgattctataagtagcttcactagcaag 13251634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 19202487 - 19202684
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat-----tggaaatatttaagtatcta 123  Q
    |||||||||  | |||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||     | | ||||||||| ||||||    
T  19202487 ataacctaactgatcgttcgtaaagaacggccgcaaattcaagcaaaaatagcattcatatggaacactcataatatgtattggaatatttaaatatcta 19202586  T
Q  124 acaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||| ||||||||| ||| ||  | ||||||||||||||||||||    
T  19202587 acaacctagaatggatatggaaatatttggctctgaatctcaccggttatgatattcggaaaagagaaggttatcatataagtaccttcactagcaag 19202684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 39269324 - 39269125
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaag 117  Q
    |||||||||||||| || || | ||||||||||  |   |||||||||||||||||| ||||||||||||||||| ||||      ||||||||||||||    
T  39269324 gtataataacctaaccgatcatccgtaaagaacagctgcaaattcaagcaaaaatagtattcatatggaacactcgtaatatatattggaaatatttaag 39269225  T
Q  118 tatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactag 217  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| | ||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  39269224 tatctaacaacctagaatggatatggaaatatttggctgcgaatctcactagttatgctattcagaaaagagatgatgattttataagtacctttactag 39269125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 1586590 - 1586761
Alignment:
Q  48 gtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaat 147  Q
    |||||||||||| | |||||  ||||||||||| |||||||||||||||||||||| | ||  |||||||||||||||||| |||||||||| | |||||    
T  1586590 gtaaagaacgactacaaatttgagcaaaaatagaattcatatggaacactcataatagaaagaatttaagtatctaacaacatagaatggat-ttgaaat 1586688  T
Q  148 atttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    ||||||||||||||||||    ||||| ||||||||||||||||||||||  |  ||||||||||| |||||||    
T  1586689 atttggctctaaatctcattggttatg-tattcagaaaagagatggtgatcctacaagtaccttcagtagcaag 1586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 8316055 - 8315945
Alignment:
Q  111 atttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtacct 210  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||  ||||| |||| |||||||||| ||||||  | |||||||||    
T  8316055 atttaactatctaacaacctagaatggataaggaaatatttagctctaaatctcaccggttatgctatttagaaaagagacggtgatcctataagtacct 8315956  T
Q  211 tcactagcaag 221  Q
    ||| |||||||    
T  8315955 tcagtagcaag 8315945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 20578530 - 20578680
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctctaaatc 162  Q
    |||||||||||| |||| ||||||||||||||| |||||||       |||| |||||||||| |||||||||||||||| |||||||||||||| ||||    
T  20578530 aaattcaagcaataataacattcatatggaacattcataat-------atttgagtatctaactacctagaatggatatgaaaatatttggctctgaatc 20578622  T
Q  163 tcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||   |||| |||||||||||||| |||||||  | |||||||| | |||||||||    
T  20578623 tcacc-ggtatgctattcagaaaagagttggtgatcctataagtaccattactagcaag 20578680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 19155425 - 19155372
Alignment:
Q  144 aaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgat 197  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  19155425 aaatatttggctctaaatctcactgattatgctattcagaaaagagatggtgat 19155372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 20754824 - 20754771
Alignment:
Q  144 aaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgat 197  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  20754824 aaatatttggctctaaatctcactgattatgctattcagaaaagagatggtgat 20754771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 19155530 - 19155459
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcat 100  Q
    ||||| ||| || |||| |||||||||||||   |||||| |||||||||| |||||||||| |||||||||    
T  19155530 ataacttaaccgatcgtccgtaaagaacgaccgcaaattcgagcaaaaataacattcatatgaaacactcat 19155459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 20754929 - 20754858
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcat 100  Q
    ||||| ||| || |||| |||||||||||||   |||||| |||||||||| |||||||||| |||||||||    
T  20754929 ataacttaaccgatcgtccgtaaagaacgaccgcaaattcgagcaaaaataacattcatatgaaacactcat 20754858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 6038238 - 6038197
Alignment:
Q  170 ttatgttattcagaaaagagatggtgattttgtaagtacctt 211  Q
    ||||||||||||||||||||||||||||| | | ||||||||    
T  6038238 ttatgttattcagaaaagagatggtgattatatgagtacctt 6038197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 24319634 - 24319429
Alignment:
Q  24 gtataataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat--------tggaaatattta 115  Q
    |||||||||||||  || |||| ||||||||||||||| ||||||| |||||||||||| ||||||| ||||||  ||||        || || ||||||    
T  24319634 gtataataacctagccgatcgtccgtaaagaacgacaacaaattcatgcaaaaatagcactcatatgtaacacttgtaatctatatattgaaagtattta 24319535  T
Q  116 agtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcact 215  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||||||  ||||| |||||||||||||| || ||||  | |||||||||| |||    
T  24319534 agtatctaacaacctagaatggataagaaaatatttggctctgaatctcaccggttatgctattcagaaaagagttgttgatcctataagtacctttact 24319435  T
Q  216 agcaag 221  Q
    ||||||    
T  24319434 agcaag 24319429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 9834510 - 9834708
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatct 122  Q
    ||||| |||||| |||| ||||| ||||||| | | ||||| | || ||||||||||||||||| ||||||||||      |||||||||||||||||||    
T  9834510 ataacttaatcgatcgtccgtaaggaacgaccacacattcaggtaataatagcattcatatggatcactcataatatatattggaaatatttaagtatct 9834609  T
Q  123 aacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |  ||||| |||||  ||||||| |||||||  | ||||||||||||||| ||||    
T  9834610 aacaacctagaatgtatatggaaatatttggctctgaatctcatcggttatgctattcgaaaaagagttggtgatcctataagtaccttcactaacaag 9834708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 31599108 - 31598948
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcata-attggaaatatttaagtatctaa-caacctagaatggatatggaaatatttggctctaaa 160  Q
    |||||| |||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||    
T  31599108 aaattcgagcaaaaataacattcatatggaaatctcatatattggaagtatttaagtatctaaacaacctagaatggatatgaaaatatttggctctgaa 31599009  T
Q  161 tctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||||| || || ||||  ||||||||||||||||  | |||||||| ||| |||||||    
T  31599008 tctcaccagttttgctatttggaaaagagatggtgatcctataagtaccatcagtagcaag 31598948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 19054175 - 19054338
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataat-----tggaaatatttaagtatctaacaacctagaatggatatggaaatatttggctct 157  Q
    |||||||||||| ||||||||||  ||||||||||||||||     | | |||||||||||||||||| |||||||||| |||||||||| ||||||| |    
T  19054175 aaattcaagcaataatagcattctaatggaacactcataatatatattggaatatttaagtatctaactacctagaatgaatatggaaatgtttggctat 19054274  T
Q  158 aaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
      |  |||||  ||||| ||||||||||||||||||||||  | ||||||||||||||||||||    
T  19054275 gtaaatcaccggttatgctattcagaaaagagatggtgatcctataagtaccttcactagcaag 19054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 31213566 - 31213724
Alignment:
Q  63 aaattcaagcaaaaatagcattcatatggaacactcataattggaaatatttaagtatct-aacaacctagaatggatatggaaatatttggctctaaat 161  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||| | ||||||||||||| || | ||| |||||||| |||||||    
T  31213566 aaattcaagcaaaaataacattcatatagaacactcataattggaagaatttaagtatataaacaacctagaat-gaaacggagatatttggttctaaat 31213664  T
Q  162 ctcaccaattatgttattcagaaaagagatggtgattttgtaagtaccttcactagcaag 221  Q
    |||||| |||| | |||| |||||||| | ||||||  | |||||||||| | |||||||    
T  31213665 ctcaccgattaagctatttagaaaagaaacggtgatcctataagtaccttaagtagcaag 31213724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 9826386 - 9826496
Alignment:
Q  111 atttaagtatctaacaacctagaatggatatggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgattttgtaagtacct 210  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| | ||||||| |  ||||| |||||| ||||||| |||||||  | |||||||||    
T  9826386 atttaagtatctaacaacctaaaatggatatgaaaatatttggctttgaatctcatcggttatgctattcaaaaaagagttggtgatcctataagtacct 9826485  T
Q  211 tcactagcaag 221  Q
    |||||| ||||    
T  9826486 tcactaacaag 9826496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 20547492 - 20547364
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcata------attggaaatatttaagtatct 122  Q
    ||||| ||| || |||| ||||||||||| |   ||||||||||||||||| ||||||||||||||||| |||      |||||||||||||| | ||||    
T  20547492 ataacttaaccgatcgtccgtaaagaacggccgcaaattcaagcaaaaataacattcatatggaacactgataatatgtattggaaatatttatgcatct 20547393  T
Q  123 aacaacctagaatggatatggaaatattt 151  Q
    ||||||||| |||||||||||| ||||||    
T  20547392 aacaacctacaatggatatggagatattt 20547364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 24263211 - 24263267
Alignment:
Q  141 tggaaatatttggctctaaatctcaccaattatgttattcagaaaagagatggtgat 197  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  24263211 tggaaatatttggctctaaatctcaccggttatgctattcagaaaagagatggtgat 24263267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 25571491 - 25571440
Alignment:
Q  49 taaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcat 100  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  25571491 taaagaacgacagaaaattcgagcaaaaataacattcatatggaacactcat 25571440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 23772050 - 23772108
Alignment:
Q  42 tcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcat 100  Q
    |||| |||||||||||||   |||||  ||||||||||||| |||||||||||||||||    
T  23772050 tcgtccgtaaagaacgacctcaaatttgagcaaaaatagcaatcatatggaacactcat 23772108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 34489951 - 34490012
Alignment:
Q  72 caaaaatagcattcatatggaacactcataattggaaatattta-agtatctaacaacctag 132  Q
    |||| |||||||||||||||||||||||||||   ||  ||||| |||||||||||||||||    
T  34489951 caaagatagcattcatatggaacactcataatataaagaatttatagtatctaacaacctag 34490012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 18828403 - 18828543
Alignment:
Q  29 ataacctaatcgttcgttcgtaaagaacgacaaaaaattcaagcaaaaatagcattcatatggaacactcataat------tggaaatatttaagtatct 122  Q
    ||||||||| || | || |||| |||||||||  ||||||||||||  ||| |||||||||||||||||||||||      |||||||||||||||||||    
T  18828403 ataacctaaccgattgtccgtacagaacgacatcaaattcaagcaatgataacattcatatggaacactcataatatgtattggaaatatttaagtatct 18828502  T
Q  123 aacaacctagaatggatatggaaatatttggctctaaatct 163  Q
     | ||||||||||| |||||| ||||||||||||| |||||    
T  18828503 gaaaacctagaatgaatatgggaatatttggctctgaatct 18828543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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