View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15380_low_10 (Length: 245)

Name: NF15380_low_10
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15380_low_10
NF15380_low_10
[»] chr7 (17 HSPs)
chr7 (1-223)||(26302211-26302433)
chr7 (13-223)||(26179497-26179707)
chr7 (2-223)||(26251251-26251472)
chr7 (15-223)||(26242816-26243024)
chr7 (15-223)||(26297864-26298072)
chr7 (67-221)||(26278167-26278318)
chr7 (34-190)||(26088217-26088373)
chr7 (34-190)||(26112005-26112161)
chr7 (34-183)||(26191700-26191849)
chr7 (34-190)||(19103103-19103259)
chr7 (13-166)||(26128981-26129134)
chr7 (34-166)||(26155623-26155755)
chr7 (1-205)||(26204287-26204491)
chr7 (6-205)||(26223930-26224129)
chr7 (34-166)||(26186677-26186809)
chr7 (25-166)||(26260298-26260439)
chr7 (39-166)||(26227412-26227539)
[»] chr4 (1 HSPs)
chr4 (2-223)||(44903656-44903877)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26302211 - 26302433
Alignment:
Q  1 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26302211 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggca 26302310  T
Q  101 tcctcatgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26302311 tcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagaaatgaggatgaagaa 26302410  T
Q  201 ggtttcctgcaagaatttgagga 223  Q
    ||||||||||||| |||||||||    
T  26302411 ggtttcctgcaagtatttgagga 26302433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 26179497 - 26179707
Alignment:
Q  13 ttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgccca 112  Q
    ||||||||||   ||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||  ||| ||||| ||    
T  26179497 ttggaaaagaggaagaatggctaaattggcttaactcaaagcaaaatgagtctgtattatatgtaagttttggtagccttgttaggtttccgcatgctca 26179596  T
Q  113 gcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaaggtttcctgcaa 212  Q
    ||||||||||||||| |||||||||||||| |||||||| | |||||| |||||  ||  ||||||||||| |||||| |||| ||||||||||||||||    
T  26179597 gcttgtagaaattgcgcacgggcttgaaaactcaggtcaaaattttatctgggttataaaaaaatatgataaagatgaagatggagaaggtttcctgcaa 26179696  T
Q  213 gaatttgagga 223  Q
    |||||||||||    
T  26179697 gaatttgagga 26179707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 26251251 - 26251472
Alignment:
Q  2 ggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcat 101  Q
    |||||| | ||| |||||| | ||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  | ||| |    
T  26251251 ggagaaaagcttaggaaaacagacagaattgcttaattggcttaactcgaagcaaaatgagtcagtattgtatgtaagttttggcagccttactaggctt 26251350  T
Q  102 cctcatgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaag 201  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||  |||| |||||| |||||| |||| |||||    
T  26251351 cctcatgctcagcttgtagaaattgcacatgggcttgaaaattcaggtcataattttatctgggttataaaaaaagatgataaagatgaggatggagaag 26251450  T
Q  202 gtttcctgcaagaatttgagga 223  Q
    ||||  ||||| ||||||||||    
T  26251451 gttttttgcaaaaatttgagga 26251472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 26242816 - 26243024
Alignment:
Q  15 ggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagc 114  Q
    |||||| | ||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    | ||  ||||||||| ||||    
T  26242816 ggaaaacagacagaattgctaaattggcttaacctgaagcaaaatgagtctgtattgtatgtaagttttggcagccagactaggtttcctcatgctcagc 26242915  T
Q  115 ttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaaggtttcctgcaaga 214  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| |||||  ||  |||| |||||| || ||| |||| ||||||||||||||||||    
T  26242916 ttgtagaaattgctcacgggcttgaaaattcaggtcataattttatctgggttataaaaaaagatgataaagttgaggatggagaaggtttcctgcaaga 26243015  T
Q  215 atttgagga 223  Q
    |||||||||    
T  26243016 atttgagga 26243024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 26297864 - 26298072
Alignment:
Q  15 ggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagc 114  Q
    |||||| | ||||||||| ||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||  | ||| |||| |||| ||||    
T  26297864 ggaaaacatacagaattgctaaattggcttaattcgaaggaaaatgaatctgtattgtatgtaagttttggcagctttactaggcttccttatgctcagc 26297963  T
Q  115 ttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaaggtttcctgcaaga 214  Q
    ||||||||||||  || |||||||||||||||||||||| |||||| |||||  ||  ||   |||||| |||||| |||| ||||||||| ||||||||    
T  26297964 ttgtagaaattgttcatgggcttgaaaattcaggtcataattttatctgggttataaaaagggatgatacagatgaggatggagaaggttttctgcaaga 26298063  T
Q  215 atttgagga 223  Q
    |||||||||    
T  26298064 atttgagga 26298072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 26278167 - 26278318
Alignment:
Q  67 tattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggt 166  Q
    ||||||||||||| |||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26278167 tattgtatgtaagctttggcagccttattaggcttcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcataattttatctgggt 26278266  T
Q  167 cgtacgaaaatatgatagagatgatgatgaagaaggtttcctgcaagaatttgag 221  Q
      |   |||| || ||| |||||| |||| |||||||||||||||||||||||||    
T  26278267 tat---aaaaaataataaagatgaggatggagaaggtttcctgcaagaatttgag 26278318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 26088217 - 26088373
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||  || ||| |  | |||| ||| |||||||||||||||||||    
T  26088217 taaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaaattgcacacgg 26088316  T
Q  134 gcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatga 190  Q
     || |||||||||||||||| |||||| ||||| ||| | |||||||| || |||||    
T  26088317 tctcgaaaattcaggtcataattttatctgggttgtaaggaaatatgagagggatga 26088373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 26112005 - 26112161
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||  || ||| |  | |||| ||| |||||||||||||||||||    
T  26112005 taaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaaattgcacacgg 26112104  T
Q  134 gcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatga 190  Q
     || |||||||||||||||| |||||| ||||| ||| | |||||||| || |||||    
T  26112105 tctcgaaaattcaggtcataattttatctgggttgtaaggaaatatgagagggatga 26112161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 26191700 - 26191849
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||  |   | |||   ||||||| |||||||||||||||||||| ||    
T  26191700 taaattggcttaactcaaagcaaaatgagtctgtactttatgtaagctttggaagtttaactaggctaactcatgctcagcttgtagaaattgcacatgg 26191799  T
Q  134 gcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgata 183  Q
    |||||||||||||||||||| |||||| ||||| ||| | ||| ||||||    
T  26191800 gcttgaaaattcaggtcataattttatctgggttgtaaggaaaaatgata 26191849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 19103259 - 19103103
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   | ||| |    |||  ||| |||||||||| ||||||||    
T  19103259 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggaagtctaactaggcttgaaaatgatcagattgtagaaatcgcacacgg 19103160  T
Q  134 gcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatga 190  Q
     ||||||||||||||||||| |||||| ||||| ||| | ||| |||| ||||||||    
T  19103159 tcttgaaaattcaggtcataattttatctgggttgtaaggaaaaatgagagagatga 19103103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 26128981 - 26129134
Alignment:
Q  13 ttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgccca 112  Q
    ||||||||||  |||| | | ||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||   | ||| |  | |||| ||    
T  26128981 ttggaaaagaggcagactggttaaattggcttaactcaaagcaaaatgagtccgtactgtatgtaagttttggaagtctaactaggcttgataatgctca 26129080  T
Q  113 gcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggt 166  Q
    | ||||||||||||||||||| || |||||||||||||||| |||||| |||||    
T  26129081 gattgtagaaattgcacacggtctcgaaaattcaggtcataattttatatgggt 26129134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 26155623 - 26155755
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||   | ||| |  | |||| ||| |||||||||||||||||||    
T  26155623 taaattggcttaacacaaagcaaaatgagtccgtattgtatgtaagttttggaagtctaactaggcttgataatgctcagattgtagaaattgcacacgg 26155722  T
Q  134 gcttgaaaattcaggtcatagttttatttgggt 166  Q
     || |||||||||||||||| |||||| |||||    
T  26155723 tctcgaaaattcaggtcataattttatctgggt 26155755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 26204287 - 26204491
Alignment:
Q  1 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggca 100  Q
    |||| |||||| ||||||||||   ||||||||||||||||||||| || ||| |||| |||||||| ||||||||||||||||| ||||||  | |||     
T  26204287 cggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtgttgtatgtaagttttggaagccttactaggct 26204386  T
Q  101 tcctcatgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaa 200  Q
    | ||||||  ||| |||  ||||| || || || ||||||||||| ||||||| ||| |||||||| ||  || || | |||| |||||||| |||||||    
T  26204387 ttctcatgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaa 26204486  T
Q  201 ggttt 205  Q
    |||||    
T  26204487 ggttt 26204491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 26223930 - 26224129
Alignment:
Q  6 aagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctc 105  Q
    |||||| ||||||||||   ||||||||||||||||||||| || ||| |||| |||||||| ||||||||||||||||| ||||||  | ||| | |||    
T  26223930 aagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtgttgtatgtaagttttggaagccttactaggctttctc 26224029  T
Q  106 atgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaaggttt 205  Q
    |||  ||| |||  ||||| || || || ||||||||||| ||||||| ||| |||||||| ||  || || | |||| |||||||| ||||||||||||    
T  26224030 atgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttt 26224129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 26186677 - 26186809
Alignment:
Q  34 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaattgcacacgg 133  Q
    |||||||||||||||||||||||| |||||| ||| ||||| |||||||||| ||  |   | ||| |  | |||| ||| |||||||||||||||||||    
T  26186677 taaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgctcagattgtagaaattgcacacgg 26186776  T
Q  134 gcttgaaaattcaggtcatagttttatttgggt 166  Q
     ||||||||||||| ||||| |||||| |||||    
T  26186777 tcttgaaaattcagatcataattttatctgggt 26186809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 26260298 - 26260439
Alignment:
Q  25 cagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgcccagcttgtagaaat 124  Q
    |||||||| |||||||||||||||| || |  ||||| ||||| ||||||||||||||||| ||| |   | ||| | || |||| ||| |||| |||||    
T  26260298 cagaattgttaaattggcttaactctaaccctaatgattctgtgttgtatgtaagttttggaagcttgactaggctttcttatgctcaggttgttgaaat 26260397  T
Q  125 tgcacacgggcttgaaaattcaggtcatagttttatttgggt 166  Q
     || || || ||||||||||||||||||| ||| ||||||||    
T  26260398 agctcatggacttgaaaattcaggtcataatttcatttgggt 26260439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 26227412 - 26227539
Alignment:
Q  39 tggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatc-ctcatgcccagcttgtagaaattgcacacgggctt 137  Q
    |||||||| |||||||  ||||| ||||| ||||||||||||||||| ||| |||    |  || ||||| ||||| |||||||||| || || || |||    
T  26227412 tggcttaattcaaagccgaatgattctgtgttgtatgtaagttttggaagc-ttgacaagactctctcattcccagattgtagaaatagctcatggtctt 26227510  T
Q  138 gaaaattcaggtcatagttttatttgggt 166  Q
    |||||||||||||||| ||| ||||||||    
T  26227511 gaaaattcaggtcataatttcatttgggt 26227539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44903656 - 44903877
Alignment:
Q  2 ggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcat 101  Q
    |||||||||| ||| |||||| | ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  |  || |    
T  44903656 ggagaagaacgttgaaaaagagagagaattgctaaattggcttaactcaaagcaaaatgagtctgtgttgtatgtaagttttggaagccttactaagctt 44903755  T
Q  102 cctcatgcccagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagagatgatgatgaagaag 201  Q
      |||||| |||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||| ||| | ||| |||||||||| ||  | || ||||    
T  44903756 tttcatgctcagcttgtagaaattgcacatgggcttgaaaagtcaggtcataattttatctgggttgtaaggaaaaatgatagagacgagaacgaggaag 44903855  T
Q  202 gtttcctgcaagaatttgagga 223  Q
    ||||||||||||| ||||||||    
T  44903856 gtttcctgcaagattttgagga 44903877  T

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