View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15380_low_11 (Length: 239)
Name: NF15380_low_11
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15380_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 26076305 - 26076517
Alignment:
| Q |
4 |
agtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggc |
102 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| |||||||||| || |||||||||||| |
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| T |
26076305 |
agtaagtataatcagtagattcatgaatgatccaaggaagtctcatctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggc |
26076404 |
T |
|
| Q |
103 |
ctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatg |
202 |
Q |
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||| | ||||||||| | || || | |||| ||| | ||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||| |
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| T |
26076405 |
ctgttatttccagctgcaaataaagtaggagaagctgaattagagggatactctgattcagactggtgtgaagatataatggataggaagagcacttatg |
26076504 |
T |
|
| Q |
203 |
gctacctattcaa |
215 |
Q |
| |
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||||||||||||| |
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|
| T |
26076505 |
gctacctattcaa |
26076517 |
T |
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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 32368525 - 32368391
Alignment:
| Q |
92 |
tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag |
191 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
32368525 |
tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag |
32368426 |
T |
|
| Q |
192 |
aagcacttatggctacctattcaaattaaatgatg |
226 |
Q |
| |
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||| |||| ||||| |||||||||||| ||||||| |
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| T |
32368425 |
aagtacttctggctgcctattcaaattcaatgatg |
32368391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 32368668 - 32368534
Alignment:
| Q |
4 |
agtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggc |
102 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||| ||||||||| | |
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|
| T |
32368668 |
agtaagtatcatcggtaggttcatgaatgatccaaggaaatctcatctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgcc |
32368569 |
T |
|
| Q |
103 |
ctgatgtttccagctactaacaagaaaagagaggc |
137 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
32368568 |
ctgatgtttccagctactaacaagaaaggagaggc |
32368534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 4958634 - 4958422
Alignment:
| Q |
4 |
agtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| ||| ||||| |||||||||| || ||||||||||| |
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|
| T |
4958634 |
agtaagtatcatcagtagattcatgaatgatccaaggaagtttcatctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggc |
4958535 |
T |
|
| Q |
103 |
ctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatg |
202 |
Q |
| |
|
||| | || ||| || | ||||| || |||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | | |
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|
| T |
4958534 |
ctgttattcccaactgcaaacaaagaaggagaagctgaactagagggatactctgattcagactggtgtggagatagaatggatagaaaaagcaccttta |
4958435 |
T |
|
| Q |
203 |
gctacctattcaa |
215 |
Q |
| |
|
||||||||||||| |
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|
| T |
4958434 |
gctacctattcaa |
4958422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 5243114 - 5243310
Alignment:
| Q |
4 |
agtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaaggacct-tgaagtttggc |
102 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| || |||||| ||||||| |||| |||| ||||| ||||||||||| || | |||||||| |
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|
| T |
5243114 |
agtaagtatcattagaagattcatgaatgatccaaggaagtctcatctcactgcagccaaaataataatgagatatgtgaaaggaactctaaagtttggt |
5243213 |
T |
|
| Q |
103 |
ctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcactt |
199 |
Q |
| |
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|| || || || || || ||| || || ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| |
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|
| T |
5243214 |
ttgttgcttacaactgatagcaatgaaggaaaggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcactt |
5243310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 1182860 - 1182943
Alignment:
| Q |
5 |
gtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagga |
88 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||| | || ||| ||||||||||| |
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|
| T |
1182860 |
gtaagtatcatcagtagatacatgaatgatcctaggaaatctcatctcactgcagctaaaagagtgctaagatatgtgaaagga |
1182943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 12370720 - 12370803
Alignment:
| Q |
4 |
agtaagtatcatcagtagattcatgaatgatccaaggaaatcccatctcgctgcagctaaaagaatactgagaaatgtgaaagg |
87 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || |||||| ||||| | ||||| ||| ||||| |||||||||| |
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|
| T |
12370720 |
agtaagtatcatcagtagatgcatgaatgatccaaggaagtctcatctcactgcatcaaaaaggatattgagatatgtgaaagg |
12370803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 12370874 - 12370945
Alignment:
| Q |
142 |
ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||| | | ||||||||||||| |
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|
| T |
12370874 |
ctagagggatactctgattcagactggtgtggagatagaatgg--aggaaaagcacctctagctacctattcaa |
12370945 |
T |
|
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