View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15380_low_2 (Length: 472)
Name: NF15380_low_2
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15380_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 18438007 - 18438452
Alignment:
| Q |
16 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgcaattat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18438007 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgccattat |
18438106 |
T |
|
| Q |
116 |
tcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataaatggacattaaagtatattttcacaccttaaaaattca |
215 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18438107 |
tcaattttatttcgcagtaaaagttgaataaaaaactgatcaattgatgaagatagaaataaatggacattaaagtatattttcacaccttaaaaattca |
18438206 |
T |
|
| Q |
216 |
catatcgtgtnnnnnnnntgcaaaactacatacatggcttgttaattgatacctatagagtactaacaacatattacc-taaaatgaattttatgattat |
314 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18438207 |
catatcgtgtaaaaaaaatgcaaaactacatacatggctagttaattgatacctatagagtactaacaacatattaccctaaaatgaattttatgattat |
18438306 |
T |
|
| Q |
315 |
ctattacaagttatataaaatgacattactttagaattttttaagaaaaacaaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaataaaaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18438307 |
ctattacaagttatataaaatgacattactttagaattttttaagaaaaacaaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaataaaaca |
18438406 |
T |
|
| Q |
415 |
ttttagagttgcaagataaggttgtgtgatatgctacttttaagaa |
460 |
Q |
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| T |
18438407 |
ttttagagttgcatgataaggttgtgtgatatgctacttttaagaa |
18438452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 18442284 - 18442730
Alignment:
| Q |
16 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgcaattat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18442284 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgccattat |
18442383 |
T |
|
| Q |
116 |
tcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataaatggacattaaagtatattttcacaccttaaaaattca |
215 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18442384 |
tcaattttatttcgcagtaaaagttgaataaaaaactaatcaattgatgaagacagaaataaatggacattaaagtttattttcacaccttaaaaattca |
18442483 |
T |
|
| Q |
216 |
catatcgtgtnnnnnnnn-tgcaaaactacatacatggcttgttaattgatacctatagagtactaacaacatattacc-taaaatgaattttatgatta |
313 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18442484 |
catatcgtgtaaagaaaaatgcaaaactacatacatggctagttaattgatacctatagagtactaacaacatattaccctaaaatgaattttatgatta |
18442583 |
T |
|
| Q |
314 |
tctattacaagttatataaaatgacattactttagaattttttaagaaaaacaaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaataaaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18442584 |
tctattacaagttatataaaatgacattactttagaattttttaagaaaaacaaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaataaaac |
18442683 |
T |
|
| Q |
414 |
attttagagttgcaagataaggttgtgtgatatgctacttttaagaa |
460 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
18442684 |
attttagagttgcatgataaggttgtgtgatatgctactattaagaa |
18442730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 18433728 - 18434179
Alignment:
| Q |
16 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgcaattat |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18433728 |
caacaacgaacattatcatcaccattattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgccattat |
18433827 |
T |
|
| Q |
116 |
tcaattttatttcgcagtaaaagtagaagaaaaaactgatcaattgatgaagatagaaataaatggacattaaagtatattttcacaccttaaaaattca |
215 |
Q |
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|
|||||||||||||||| ||||||| ||| |||||||| |||||| ||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| || |
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| T |
18433828 |
tcaattttatttcgcaataaaagttgaataaaaaacttatcaatagattaagataaaaataaatggatattaaagaatattttcacaccttaaaaatcca |
18433927 |
T |
|
| Q |
216 |
catatcgtgtnnnnnnnn-----tgcaaaactacatacatggcttgttaattgatacctatagagtactaacaacatatta-cctaaaatgaattttatg |
309 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18433928 |
catatcgtgtaaaaaaatatatatgcaaaactacatacatggctagttaattgatacctatagagtactaacaacatattatcctaaaatgaattttatg |
18434027 |
T |
|
| Q |
310 |
attatctattacaagttatataaaatgacattactttagaattttttaagaaaaacaaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaata |
409 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18434028 |
gttatctattacaaattgtataaaattacattactttagaatattttaagaaaa-caaaagcatgtgtttgtttgcattaatgaaaatcatttcaaaata |
18434126 |
T |
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| Q |
410 |
aaacattttaga--gttgcaagataaggttgtgtgatatgctacttttaagaa |
460 |
Q |
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|||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
18434127 |
aaacattttagagtgttgcatgataaggttgtgtgatgtgctacttttaagaa |
18434179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 18447413 - 18447554
Alignment:
| Q |
16 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttcttttttctgcaattat |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
18447413 |
caacaacgaacattattatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctctttgtagatcttgttttttctgccattat |
18447512 |
T |
|
| Q |
116 |
tcaattttatttcgcagtaaaagtagaagaaaaaactgatca |
157 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18447513 |
tcaattttatttcgcagtaaaagttgaagaaaaaactgatca |
18447554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 20945523 - 20945596
Alignment:
| Q |
16 |
caacaacgaacattatcatcaccaatattgaaactatctttttcatctcatagtttgccataactcttctcttt |
89 |
Q |
| |
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||||||| || |||||||||| ||| |||| || |||||||||||||| | |||||||||||||||| |||| |
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| T |
20945523 |
caacaactaagattatcatcatcaaaattgtcacattctttttcatctcacactttgccataactcttcacttt |
20945596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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