View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15380_low_5 (Length: 381)
Name: NF15380_low_5
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15380_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 51 - 363
Target Start/End: Original strand, 34316626 - 34316938
Alignment:
| Q |
51 |
ggaccgatgctattagggagttgcatgcaaaggtttgagccaacagtcagaagaagaatgaatggtatgcaaagcaagctaatatgaggattgaacattt |
150 |
Q |
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| T |
34316626 |
ggaccgatgctattagggagttgcatgcaaaggttcgagccaacaatcagaagaagaatgaatagtatgcaaagcaagctaatatgaggattgaacattt |
34316725 |
T |
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| Q |
151 |
tccaaatcaaagaaaatccaaactgaacccaagaggagatgaaccttttcaagttcttgagaagatcgacgataatgccttcaagctcgatttgccatgc |
250 |
Q |
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| T |
34316726 |
tccaaatcaaagaaaatccaaactgaacccaagaggagatgaaccttttcaagttcttgagaagatcgacgttaatgccttcaagctcgatttgccatcc |
34316825 |
T |
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| Q |
251 |
gaatatggaaatatcagtgctgatgtacgtaatagatctatctatattgaacatgcaagtatttgatcataaactactaatcatcaatattctaaaccct |
350 |
Q |
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| T |
34316826 |
gaatatggaaatatcagtgctgatgtacgtagtagatctatctatattgaacatgcgagtatttgatcataaactactaatcatcaatattctaaaccct |
34316925 |
T |
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| Q |
351 |
aaacactaatata |
363 |
Q |
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| T |
34316926 |
aaacactaatata |
34316938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 16935218 - 16935110
Alignment:
| Q |
162 |
gaaaatccaaactgaacccaagaggagatgaaccttttcaagttcttgagaagatcgacgataatgccttcaagctcgatttgccatgcgaatatggaaa |
261 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||| | || | |||||| |
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| T |
16935218 |
gaaaatccaaactgaacccaagaggagatggaccttttcatattctagagaagatcaacgataatgcctacaagctggatttgccaagtgagtgtggaaa |
16935119 |
T |
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| Q |
262 |
tatcagtgc |
270 |
Q |
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| T |
16935118 |
tattagtgc |
16935110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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