View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15380_low_7 (Length: 290)
Name: NF15380_low_7
Description: NF15380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15380_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 44227695 - 44227438
Alignment:
| Q |
11 |
caaaggtagtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattc |
110 |
Q |
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| T |
44227695 |
caaaggtagtatatatacaaacatgttttctcattccatattcattt-ccttttccacaaagaaacatcaatacaacaagtttttttccattcatcattc |
44227597 |
T |
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| Q |
111 |
tttaattctttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataacattgtcttaaaaagaaaaataagaaacacac |
210 |
Q |
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| T |
44227596 |
tttcattctttcattatattcta-----cacttcatttagtttattgtttgggttcaattcataataacattgtcttaaaaagaaaaatcagaaacacac |
44227502 |
T |
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| Q |
211 |
aagcttgtgttgaagctgtttcataacagcaaaaatggaagggactgatatatacagagctact |
274 |
Q |
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| T |
44227501 |
aagcttgtgttaaagctgtttcataacagcaaaaatggaagggactgatatatacagagctact |
44227438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 44215528 - 44215280
Alignment:
| Q |
19 |
gtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattctttaattc |
118 |
Q |
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| T |
44215528 |
gtataaatacaaacatgttttctcattccatattcattt-cctttgccacaaagaaacatcaatacaacaagtttttt-cctttcatcattctttgattc |
44215431 |
T |
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| Q |
119 |
tttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataaca---ttgtcttaaaaagaaaaataagaaacacacaagct |
215 |
Q |
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| T |
44215430 |
tttcattttattcga-----cactccatttagtttaatgttttggttcaattcataataacagtattgccttgaaaagaaaaataagaaacaca--agct |
44215338 |
T |
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| Q |
216 |
tgtgttgaagctgtttcataacagcaaaaatggaagggactgatatatacagagctact |
274 |
Q |
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| T |
44215337 |
tgtgttgaggctgttgaacaa-agcaaaaatggaagggactgatatatacagagctact |
44215280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 44238639 - 44238575
Alignment:
| Q |
209 |
acaagcttgtgttgaagctgtttcataacagc---aaaaatggaagggactgatatatacagagc |
270 |
Q |
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| T |
44238639 |
acaagcttgtgttaaagctgtttcacaacagcacaaaaaatggagggaacagatatatacagagc |
44238575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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