View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_high_2 (Length: 510)
Name: NF15381_high_2
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 36547519 - 36548012
Alignment:
| Q |
17 |
aatatgatctccaactgttctttacaacnnnnnnngtgaagggacttaaagatagtctgatgaaattggaaaccaaaacaatttatattctctcaaactt |
116 |
Q |
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| T |
36547519 |
aatatgatctccaacagttctctacaactttttttgtgaagggacttaaagatagtctgatgaaattggaaaccaaaacaatttatattctctcaaactt |
36547618 |
T |
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| Q |
117 |
tcctgttagcaggtcctattacttggaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttctttaca |
216 |
Q |
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| T |
36547619 |
tcctgttagcaggtcctattacttggaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttctttaca |
36547718 |
T |
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| Q |
217 |
tttatatgagcaacggtagtcttgcttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcggatattt |
316 |
Q |
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| T |
36547719 |
tttatatgatcaacggtagtcttgcttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcggatattt |
36547818 |
T |
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| Q |
317 |
gctcggtggtatacatgttctcactattcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttacctttgtgttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36547819 |
gctcggtggtatacatgttctcactattcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttacctttgtgttg |
36547918 |
T |
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| Q |
417 |
atgatccaggcgaaaatcatgagccattgagctggaatatgagatttggcatagcactagacgttgcaagggtgatggaatatcttcattattc |
510 |
Q |
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| T |
36547919 |
atgatccaggcgaaaatcatgagccattgagctggaatatgagacttggcatagcactagacgttgcaagggtgatggaatatctacattattc |
36548012 |
T |
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