View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_high_4 (Length: 429)
Name: NF15381_high_4
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 26494916 - 26495320
Alignment:
| Q |
1 |
tggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494916 |
tggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttca |
26495015 |
T |
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| Q |
101 |
ttaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactagattcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
26495016 |
ttaccaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattagattcaac |
26495115 |
T |
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| Q |
201 |
aattggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttaga |
300 |
Q |
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| T |
26495116 |
aattggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttaga |
26495215 |
T |
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| Q |
301 |
tataaatgatacattgatgccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgtgtatat |
400 |
Q |
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| T |
26495216 |
tataaatgacacattgatgccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgtgtgtgt |
26495315 |
T |
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| Q |
401 |
ctgtg |
405 |
Q |
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||||| |
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| T |
26495316 |
ctgtg |
26495320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26506943 - 26507105
Alignment:
| Q |
1 |
tggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttca |
100 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | ||||| |||| ||||||||| |||||||||||| |
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| T |
26506943 |
tggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtactttgtgacaaatttagtttggaactttgaatggaagacttca |
26507042 |
T |
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| Q |
101 |
ttaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
163 |
Q |
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||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
26507043 |
ttaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatcca |
26507105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 41127338 - 41127405
Alignment:
| Q |
8 |
gggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt |
75 |
Q |
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| T |
41127338 |
gggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt |
41127405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 15176379 - 15176287
Alignment:
| Q |
1 |
tggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaa |
93 |
Q |
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| T |
15176379 |
tggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttttgaattttgagtggaa |
15176287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
| Q |
114 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
163 |
Q |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2294246 |
atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca |
2294295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
| Q |
114 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
163 |
Q |
| |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2310577 |
atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca |
2310626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2331019 - 2331112
Alignment:
| Q |
1 |
tggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag |
94 |
Q |
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|||||| |||||||| |||||||||| ||||| || || |||| ||||| ||||| ||||| ||||||||||||| ||| || || |||||| |
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| T |
2331019 |
tggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaag |
2331112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 2303790 - 2303842
Alignment:
| Q |
42 |
tgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag |
94 |
Q |
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|||||||||||||||| ||||| ||||||||||||| ||| || || |||||| |
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| T |
2303790 |
tgctccatttagaatattttgtggctaatttggtttggaatttcgattggaag |
2303842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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