View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_high_6 (Length: 302)
Name: NF15381_high_6
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 45513139 - 45512836
Alignment:
| Q |
2 |
cttataaagtttattaaaacgacatcgatatccc-tctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgtctct |
100 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45513139 |
cttataaagtttattaaaacgacatcgacaccccctctagtttcgaaactaacattaacctcccgtaagttttaatcaaatagacaatcaccccgtctct |
45513040 |
T |
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| Q |
101 |
attaacagttaatttttccgttaactcttcttagagaatcttctgttaacat--tgtggggacaaaccttcattgttgaatctaagtcaatccattaata |
198 |
Q |
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| T |
45513039 |
attaacagttaatttttccgttaactcttcttaaagaatcttctgttaacatattgtggggacaaaccttcattgttgaatctaagtcaatccattaata |
45512940 |
T |
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| Q |
199 |
tcatcaaccaaacatttaagaaaccttacagattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattccta |
298 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512939 |
tcatcaaccaaacatttaagaaaccttacagattataatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattccta |
45512840 |
T |
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| Q |
299 |
attt |
302 |
Q |
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|||| |
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| T |
45512839 |
attt |
45512836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 35744591 - 35744310
Alignment:
| Q |
11 |
tttattaaaacgacatcgatatccc-tctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgt-ctctattaaca- |
107 |
Q |
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||||||||||||||| || ||||| |||| |||| ||||||||||||||||||| | ||||||||||||||| |||| ||||| | ||||||||||| |
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| T |
35744591 |
tttattaaaacgacaatgacatcccctctaatttcaaaactaacattaacctcccttgaattttaatcaaataaacaaacaccctattctctattaacac |
35744492 |
T |
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| Q |
108 |
-gttaatttttccgttaactctt-cttagagaatcttctgttaacattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaa |
205 |
Q |
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| T |
35744491 |
cgttaatttttcccttaattttttcttaaagaatcttctattaaaattgtggggacaaaccttcattgttgaatc-gagtcaatccactaatatcatc-- |
35744395 |
T |
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| Q |
206 |
ccaaacatttaagaaaccttacag-attagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaa |
299 |
Q |
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| T |
35744394 |
----------aagaaaccctacagcattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaa |
35744310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 26126739 - 26126683
Alignment:
| Q |
245 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
301 |
Q |
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|||||||||| ||||||| || |||||||||||||||||||| || |||||| |||| |
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| T |
26126739 |
ggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaatt |
26126683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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