View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_high_8 (Length: 289)
Name: NF15381_high_8
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2309532 - 2309785
Alignment:
| Q |
1 |
actcataatttctcttccccacataaaattagtagttaacagtgtcaacgctaaagagtagttcacatttatgctagaacaattatgcataggagttttt |
100 |
Q |
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| T |
2309532 |
actcataatatctctttcccacgtaaaattagtagttaacagtgtcaacgctaaagagtagttcacatttatgctagaaccattatgcataggag-tttt |
2309630 |
T |
|
| Q |
101 |
attcattgatttttggtagtttccactggagatcttaattacttaatggtttgttgtagtacgtgtcaatgagttgtcatgtggttagatccgaaacccc |
200 |
Q |
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| T |
2309631 |
attcattgatttttggtagttttcattggagatc----ttacttaatggtttgttgtagtacgtggcaatgagttgtcatgtggttagatctgaaacccc |
2309726 |
T |
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| Q |
201 |
-ttttttccatcattataattctaatgtaacaatattatctctttgtttatatatatat |
258 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2309727 |
ttttttttcatcattataattttaatgtaacaatattatctgtttgtttatatatatat |
2309785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 2311733 - 2311868
Alignment:
| Q |
97 |
ttttattcattgatttttggtagtttccactggagatcttaattacttaatggtttgttgtagtacgtgtcaatgagttgtcatgtggttagatccgaaa |
196 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2311733 |
ttttattcattgatttttggtagtttccattggagatctta----cttaatggtttgttgtagtacgtggcaatgagttgtcatgtggttagatccgaaa |
2311828 |
T |
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| Q |
197 |
ccccttttttccatcattataattctaatgtaacaatatt |
236 |
Q |
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| T |
2311829 |
ccccttttttccatcattataattctaatgtaacactatt |
2311868 |
T |
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