View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_low_1 (Length: 666)
Name: NF15381_low_1
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 16151743 - 16151105
Alignment:
| Q |
19 |
acgattgtcaaattttaagaccaaaaatatttgagtgagcattgtttgaagaaattttttgacagactaaaaacaaaaagtgatatatttataaaaacgg |
118 |
Q |
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| T |
16151743 |
acgattgtcaatttttaagacgaaaaatatttgagggagcattgtttgaagaaattttttgac-gactaaaaacaaaat---atatatttataaaaacgg |
16151648 |
T |
|
| Q |
119 |
aggacttatttaaaccgtaataaaattcatatctattgagttctacaggtttcaacggataaggttccgtgttgtcgctggttcagcattttcattccta |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
16151647 |
gggacttatttaaaccataataaaattcatatctattgagttctacaggtttcaacggataaggttccgtgttgtcgctgctttagcattttcattccta |
16151548 |
T |
|
| Q |
219 |
gattctctgataattgttcaagtatgttaaaatctacaggttttagggttttgggagtttgtgaaaaataaactacaacaatgtttgcattcatctaata |
318 |
Q |
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| T |
16151547 |
gattctctgataattgttcaagtctgttaaaatctacaggttttagggttttgggagtttgagaaaaataaactacaacaatgtttgcattcatctaa-- |
16151450 |
T |
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| Q |
319 |
tatagtgtcaaattttgtgatgttgtggttgccgttggtgaagtgatctataaatatctttgttacttagtcaaaataaacattgtgaagttgtagacga |
418 |
Q |
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| T |
16151449 |
tatagtgtcaaattttgtgatgttgtggttgccgttgttgaaataatctacaaatatctttgctacttagtcaaaatcaacattgtgaagttgtagacga |
16151350 |
T |
|
| Q |
419 |
tgcacccaattgatggcatgaaccaattccaaagattctccgacttccgtgga-----------gtgaccaaagtgtcatagcaaaaccc---tatagtt |
504 |
Q |
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| T |
16151349 |
tgcacccaattgatggcatgaaccaattccaaagattctccgacttccgtggagcaaatatgttgtgaccaaagtgtcatagc--aacccttgtatagtt |
16151252 |
T |
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| Q |
505 |
cagcgtgacggagaatgagacgtcaatgttgcacattaggcaccctgttactggtggatgccaacgagacaactgatgttagttgtctcgtgtcagtttc |
604 |
Q |
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| T |
16151251 |
cagcgtgacggagaatgagacatcaatgttgcacattaggcgccctgttactggtgaatgccaacgagacaaccgatgttagttgtctcctgtcagtttc |
16151152 |
T |
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| Q |
605 |
tagagtaggccgatcttgttgttgttttgttcacttagcatcctttg |
651 |
Q |
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| T |
16151151 |
tagagtaggccgatctcgttgttgttgtgttcacttagcatgctttg |
16151105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 13696944 - 13696857
Alignment:
| Q |
273 |
gagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtgaagt |
362 |
Q |
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| T |
13696944 |
gagtttgtgaaaaataaattacaacaacgtttgcattcatgta--atatagtgccaaattttgtgatattgtcgttgccgttgttgaagt |
13696857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 951987 - 952026
Alignment:
| Q |
273 |
gagtttgtgaaaaataaactacaacaatgtttgcattcat |
312 |
Q |
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| T |
951987 |
gagtttgtgaaaaataagctacaacaatgtttgcattcat |
952026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 31653261 - 31653322
Alignment:
| Q |
389 |
tcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaa |
450 |
Q |
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| T |
31653261 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaa |
31653322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 7527879 - 7527917
Alignment:
| Q |
282 |
aaaaataaactacaacaatgtttgcattcatctaatata |
320 |
Q |
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| T |
7527879 |
aaaaataaaatacaacagtgtttgcattcatctaatata |
7527917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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