View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15381_low_3 (Length: 558)

Name: NF15381_low_3
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15381_low_3
NF15381_low_3
[»] chr1 (6 HSPs)
chr1 (1-181)||(49656922-49657102)
chr1 (202-339)||(49656790-49656927)
chr1 (430-558)||(49656654-49656782)
chr1 (339-386)||(23714691-23714739)
chr1 (354-424)||(39130770-39130840)
chr1 (354-386)||(7353496-7353528)
[»] chr6 (4 HSPs)
chr6 (342-384)||(7086821-7086865)
chr6 (354-458)||(7977833-7977937)
chr6 (354-384)||(9195757-9195787)
chr6 (334-384)||(32298593-32298640)
[»] chr8 (1 HSPs)
chr8 (334-384)||(33405370-33405417)
[»] chr5 (4 HSPs)
chr5 (354-386)||(36838567-36838599)
chr5 (354-384)||(14873543-14873573)
chr5 (354-383)||(11685966-11685995)
chr5 (354-383)||(16203798-16203827)
[»] chr7 (4 HSPs)
chr7 (354-384)||(7328694-7328724)
chr7 (354-384)||(15902848-15902878)
chr7 (354-384)||(18213036-18213066)
chr7 (334-421)||(22484014-22484098)
[»] chr2 (2 HSPs)
chr2 (354-384)||(34784985-34785015)
chr2 (338-386)||(40361744-40361789)
[»] chr4 (1 HSPs)
chr4 (334-384)||(35157971-35158018)
[»] chr3 (2 HSPs)
chr3 (334-384)||(8842355-8842402)
chr3 (334-384)||(40993321-40993368)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 49657102 - 49656922
Alignment:
Q  1 tctgaatgatggtagtataatgcgaattaattaggatcacagatttgtggtgataattcagcaaaagagaagcaagagggtgattggtaggtggcaccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49657102 tctgaatgatggtagtataatgcgaattaattaggatcacagatttgtggtgataattcagcaaaagagaagcaagagggtgattggtaggtggcaccac 49657003  T
Q  101 taatattaatctttgacaactgatatcattttcttacatcgtcaacctcaatataagaggttcataagatttttgtccgtg 181  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49657002 taatattaatctttgacaactgatgtcattttcttacatcgtcaacctcaatataagaggttcataagatttttgtccgtg 49656922  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 49656927 - 49656790
Alignment:
Q  202 tccgtggctgcaaacctttttgcttttctatactttatttcttccagcaactggtttattcatcgcaatcatcaattagaaaaagtttgaggaaactaat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49656927 tccgtggctgcaaacctttttgcttttctatactttatttcttccagcaactggtttattcatcgcaatcatcaattagaaaaagtttgaggaaactaag 49656828  T
Q  302 tgtatgaacactcatcgcatcagatatgtcccacatgt 339  Q
     |||||||||||||||||||||||||||||||||||||    
T  49656827 agtatgaacactcatcgcatcagatatgtcccacatgt 49656790  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 430 - 558
Target Start/End: Complemental strand, 49656782 - 49656654
Alignment:
Q  430 cgtatcagatgttcgtgtccatatccgtgtttcataccgtcagctagataaaatagcagacaatttcgtacatcgtcgacaaactaatgcatatatgcgc 529  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||| || ||||||||| ||||||||||||||||||||| |    
T  49656782 cgtatcagatgtttgtgtccgtatccgtgtttcataccgtcagctagataaattagtagacaactttgtacatcgttgacaaactaatgcatatatgcac 49656683  T
Q  530 agttatgagatgaatgaatgaaatgagtc 558  Q
    |||||||||||||||||||||||||||||    
T  49656682 agttatgagatgaatgaatgaaatgagtc 49656654  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 23714691 - 23714739
Alignment:
Q  339 tgtcgtgtctgacacc-accgacacatataattacactaaattatgtaa 386  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  23714691 tgtcgtgtctgacaccgaccgacacgtataattacacttaattatgtaa 23714739  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 39130770 - 39130840
Alignment:
Q  354 caccgacacatataattacactaaattatgtaannnnnnnaaattattaaaggtgtcggcgtgtcagtatc 424  Q
    ||||||||||||||||||||||||||||| |||       ||||||||||  ||||| |||||||| ||||    
T  39130770 caccgacacatataattacactaaattatataattttctaaaattattaatagtgtcagcgtgtcaatatc 39130840  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 7353496 - 7353528
Alignment:
Q  354 caccgacacatataattacactaaattatgtaa 386  Q
    |||||||| ||||||||||||||||||||||||    
T  7353496 caccgacatatataattacactaaattatgtaa 7353528  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 7086865 - 7086821
Alignment:
Q  342 cgtgtctgacac--caccgacacatataattacactaaattatgt 384  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  7086865 cgtgtctgacactacaccgacacatataattacactaaattatgt 7086821  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 458
Target Start/End: Original strand, 7977833 - 7977937
Alignment:
Q  354 caccgacacatataattacactaaattatgtaannnnnnnaaattattaaaggtgtcggcgtgtcagtatcaatatcgtatcagatgttcgtgtccatat 453  Q
    ||||||||| | |||||||||| ||||||||||       |||||||||   ||||||||||||||||||| || |||| ||   ||| |||||||||||    
T  7977833 caccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtgtccatat 7977932  T
Q  454 ccgtg 458  Q
    |||||    
T  7977933 ccgtg 7977937  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 9195757 - 9195787
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  9195757 caccgacacatataattacactaaattatgt 9195787  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 32298593 - 32298640
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgt 384  Q
    |||| |||| ||||||||||||   ||||||||||||||||||||||||||    
T  32298593 acatatgtcatgtctgacacca---acacatataattacactaaattatgt 32298640  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 33405370 - 33405417
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgt 384  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||||    
T  33405370 acatgtgtcgtgtccgacacc---gacacatataattacactaaattatgt 33405417  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 36838599 - 36838567
Alignment:
Q  354 caccgacacatataattacactaaattatgtaa 386  Q
    |||||||||||||||||||||||||||||||||    
T  36838599 caccgacacatataattacactaaattatgtaa 36838567  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 14873573 - 14873543
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  14873573 caccgacacatataattacactaaattatgt 14873543  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 383
Target Start/End: Complemental strand, 11685995 - 11685966
Alignment:
Q  354 caccgacacatataattacactaaattatg 383  Q
    ||||||||||||||||||||||||||||||    
T  11685995 caccgacacatataattacactaaattatg 11685966  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 383
Target Start/End: Original strand, 16203798 - 16203827
Alignment:
Q  354 caccgacacatataattacactaaattatg 383  Q
    ||||||||||||||||||||||||||||||    
T  16203798 caccgacacatataattacactaaattatg 16203827  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 7328694 - 7328724
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  7328694 caccgacacatataattacactaaattatgt 7328724  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 15902878 - 15902848
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  15902878 caccgacacatataattacactaaattatgt 15902848  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 18213036 - 18213066
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  18213036 caccgacacatataattacactaaattatgt 18213066  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 22484098 - 22484014
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgtaannnnnnnaaattattaaaggtgtcggcgtgtcagt 421  Q
    ||||||||| |||||||||||   |||||||||||||| ||| ||||||| ||       |||||||||  |||||||||||||||||    
T  22484098 acatgtgtcatgtctgacacc---gacacatataattatactgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 34784985 - 34785015
Alignment:
Q  354 caccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||||||||||||    
T  34784985 caccgacacatataattacactaaattatgt 34785015  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 40361744 - 40361789
Alignment:
Q  338 gtgtcgtgtctgacaccaccgacacatataattacactaaattatgtaa 386  Q
    ||||||||||||||||||   ||| ||||||||||||||||||||||||    
T  40361744 gtgtcgtgtctgacacca---acagatataattacactaaattatgtaa 40361789  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 35157971 - 35158018
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgt 384  Q
    |||||||||||||| ||||||   ||||| |||||||||||||||||||||    
T  35157971 acatgtgtcgtgtcagacacc---gacacttataattacactaaattatgt 35158018  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 8842402 - 8842355
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgt 384  Q
    |||||||||||||||||||||   |||| |||||||||||| |||||||||    
T  8842402 acatgtgtcgtgtctgacacc---gacatatataattacaccaaattatgt 8842355  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 40993321 - 40993368
Alignment:
Q  334 acatgtgtcgtgtctgacaccaccgacacatataattacactaaattatgt 384  Q
    |||||||||||||| ||||||   |||||||||||||||||| ||||||||    
T  40993321 acatgtgtcgtgtccgacacc---gacacatataattacactgaattatgt 40993368  T

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