View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15381_low_5 (Length: 440)
Name: NF15381_low_5
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15381_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 79 - 422
Target Start/End: Complemental strand, 18419905 - 18419564
Alignment:
| Q |
79 |
aaatgagttcattgtatgatcaaaaatatatataagcttttgttcattttataattttatttttgtaatctatatttggaaatcatattcatatttagtt |
178 |
Q |
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| T |
18419905 |
aaatgagttcattgtatgatcaaa--tatatataagcttttgttcattttataattttatttttgtaatctatatttagaaatcatattcatatttagat |
18419808 |
T |
|
| Q |
179 |
aagcccaataaacaattgtgcttagctattatgtaaagcctgaattggtctaatatctataagactattactcaccggatgtttctcacgcgtcctattt |
278 |
Q |
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| T |
18419807 |
aagcccaataaacaactgtgcttagctattatataaagcctgaattggtctaacatctataagactataactcactgtatgtttctcacgcgtcctattt |
18419708 |
T |
|
| Q |
279 |
tttatcccaaaatactctttgctcgaattatagaatttgaactatgttttgtattttataatcggaaccatggttcaaaaactagaatccaaacactttc |
378 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18419707 |
tttaccccaaaatactctttgctcgaattatagaatctgaaccatgttttgtattttataatcggaaccatggttcaaaaactagaatcgaaacacttta |
18419608 |
T |
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| Q |
379 |
agattatcaagtctgaattttgtcaaacccacacaccccccaag |
422 |
Q |
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| T |
18419607 |
agattatcaagtctgaattttgtcaaacccacacaccccccaag |
18419564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 51025631 - 51025563
Alignment:
| Q |
257 |
atgtttctcacgcgtcctattttttat----cccaaaatactctttgctcgaattatagaatttgaact |
321 |
Q |
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| T |
51025631 |
atgtttctcacgcgtcctatttatttttcttcccaaaatactctttgctcggattatataatttaaact |
51025563 |
T |
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