View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15381_low_7 (Length: 360)

Name: NF15381_low_7
Description: NF15381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15381_low_7
NF15381_low_7
[»] chr4 (23 HSPs)
chr4 (10-345)||(33340606-33340922)
chr4 (114-219)||(17120198-17120302)
chr4 (115-229)||(42555449-42555563)
chr4 (232-339)||(40714634-40714741)
chr4 (114-232)||(23626975-23627093)
chr4 (114-223)||(51357304-51357413)
chr4 (114-223)||(36464716-36464825)
chr4 (114-230)||(40714724-40714846)
chr4 (118-223)||(8819197-8819302)
chr4 (114-190)||(38951757-38951832)
chr4 (232-308)||(23627074-23627150)
chr4 (114-190)||(41039469-41039544)
chr4 (256-332)||(43624581-43624656)
chr4 (242-332)||(17120103-17120193)
chr4 (232-318)||(19841940-19842026)
chr4 (254-332)||(51357430-51357508)
chr4 (274-339)||(8819104-8819169)
chr4 (235-337)||(29117217-29117321)
chr4 (255-307)||(42555570-42555622)
chr4 (125-190)||(22278460-22278524)
chr4 (254-339)||(36464614-36464699)
chr4 (114-190)||(19841865-19841940)
chr4 (232-339)||(38951832-38951939)
[»] chr7 (25 HSPs)
chr7 (115-230)||(22519078-22519193)
chr7 (114-337)||(2943866-2944070)
chr7 (114-223)||(36298910-36299019)
chr7 (114-223)||(1052974-1053083)
chr7 (236-332)||(15953895-15953991)
chr7 (232-339)||(30541300-30541406)
chr7 (114-190)||(30541406-30541481)
chr7 (114-190)||(38440331-38440406)
chr7 (232-339)||(5973198-5973305)
chr7 (114-179)||(31457399-31457464)
chr7 (114-190)||(23809595-23809670)
chr7 (258-332)||(1052883-1052957)
chr7 (251-305)||(36299032-36299086)
chr7 (259-332)||(7767231-7767304)
chr7 (114-190)||(11039106-11039181)
chr7 (236-339)||(11038999-11039102)
chr7 (115-183)||(15954014-15954082)
chr7 (243-335)||(22518993-22519084)
chr7 (127-190)||(5973136-5973198)
chr7 (114-168)||(25502266-25502319)
chr7 (259-325)||(25502328-25502396)
chr7 (290-335)||(38440228-38440273)
chr7 (114-146)||(14753968-14754000)
chr7 (259-339)||(33189555-33189635)
chr7 (257-297)||(47925070-47925110)
[»] chr5 (11 HSPs)
chr5 (115-223)||(2209666-2209774)
chr5 (237-337)||(26621578-26621679)
chr5 (114-190)||(42837644-42837719)
chr5 (114-190)||(39207037-39207112)
chr5 (232-318)||(33742533-33742619)
chr5 (265-339)||(3926437-3926511)
chr5 (257-318)||(2209788-2209849)
chr5 (114-170)||(26621487-26621542)
chr5 (158-190)||(42878870-42878902)
chr5 (114-190)||(3926329-3926404)
chr5 (158-190)||(23429419-23429451)
[»] chr8 (15 HSPs)
chr8 (115-223)||(31006143-31006251)
chr8 (114-229)||(6870512-6870624)
chr8 (232-339)||(28211728-28211835)
chr8 (114-190)||(8227164-8227239)
chr8 (258-331)||(31006268-31006341)
chr8 (114-190)||(7987123-7987198)
chr8 (232-339)||(7987016-7987123)
chr8 (237-339)||(8227054-8227156)
chr8 (114-190)||(7968351-7968426)
chr8 (232-332)||(9762747-9762847)
chr8 (114-190)||(9762847-9762922)
chr8 (114-190)||(36582823-36582898)
chr8 (114-190)||(11481552-11481627)
chr8 (232-331)||(11481627-11481726)
chr8 (259-336)||(6870423-6870501)
[»] chr3 (13 HSPs)
chr3 (114-224)||(48251397-48251508)
chr3 (114-223)||(36584508-36584617)
chr3 (133-223)||(26187996-26188086)
chr3 (259-340)||(26188103-26188184)
chr3 (257-340)||(48251300-48251383)
chr3 (245-340)||(3778790-3778884)
chr3 (232-339)||(13826261-13826368)
chr3 (232-332)||(27926454-27926552)
chr3 (114-190)||(25874624-25874698)
chr3 (114-190)||(5295343-5295419)
chr3 (232-339)||(21288300-21288407)
chr3 (232-297)||(36584642-36584708)
chr3 (118-182)||(27926560-27926623)
[»] chr6 (12 HSPs)
chr6 (114-229)||(28582275-28582390)
chr6 (114-223)||(10408849-10408958)
chr6 (258-337)||(10408757-10408836)
chr6 (114-190)||(35167205-35167281)
chr6 (114-190)||(10788611-10788686)
chr6 (114-190)||(641957-642032)
chr6 (232-337)||(641845-641949)
chr6 (232-332)||(8576948-8577048)
chr6 (259-339)||(28582401-28582481)
chr6 (260-339)||(7622540-7622619)
chr6 (158-190)||(8576916-8576948)
chr6 (232-337)||(35167101-35167205)
[»] chr1 (14 HSPs)
chr1 (114-223)||(2191700-2191809)
chr1 (232-339)||(15378945-15379052)
chr1 (232-339)||(47140997-47141103)
chr1 (115-223)||(38264238-38264347)
chr1 (236-332)||(11894473-11894569)
chr1 (114-174)||(36728684-36728743)
chr1 (114-190)||(48379006-48379081)
chr1 (254-339)||(2191603-2191687)
chr1 (267-339)||(31585051-31585123)
chr1 (114-190)||(47140922-47140997)
chr1 (124-190)||(11894404-11894469)
chr1 (116-190)||(25987500-25987573)
chr1 (267-332)||(17562611-17562676)
chr1 (114-175)||(29678249-29678309)
[»] chr2 (9 HSPs)
chr2 (114-190)||(5110343-5110418)
chr2 (114-190)||(13626233-13626308)
chr2 (114-190)||(13807680-13807755)
chr2 (232-339)||(5704807-5704914)
chr2 (232-339)||(13807755-13807862)
chr2 (237-339)||(45151052-45151153)
chr2 (114-190)||(31575862-31575936)
chr2 (114-190)||(45151158-45151233)
chr2 (232-294)||(45458345-45458407)
[»] scaffold0057 (1 HSPs)
scaffold0057 (114-221)||(66651-66757)
[»] scaffold0155 (1 HSPs)
scaffold0155 (114-178)||(6820-6883)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 33340606 - 33340922
Alignment:
Q  10 ataatactatatttctcgctgaatctctctatcatttggttgttgtgctaacacttgctcaatataaatttaatttctactattcattttcaatataaac 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33340606 ataatgctatatttctcgctgaatctctctatcatttggttgttgtgctaacacttgctcaatataaatttaatttctactattcattttcaatataaac 33340705  T
Q  110 aaaacatcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgt 209  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33340706 aaaacatcatattcaacaaaaacaaagtttcttgcttcaacaattccggccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgt 33340805  T
Q  210 aataactaataacactcacaacaactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactct 309  Q
    ||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33340806 aataactaataacact-------------------cacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatatattttactct 33340886  T
Q  310 atttaatagtggatatggatatctgcgggtacatat 345  Q
    ||||||||||||||||||||||||||||||||||||    
T  33340887 atttaatagtggatatggatatctgcgggtacatat 33340922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 17120302 - 17120198
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  17120302 catcatattcaacaaaaacaaagtttcttggt-caacaatcccgaccactttcacttccttttaaaggagcgtaatacaaatttgaactgttgtgtaata 17120204  T
Q  214 actaat 219  Q
    ||||||    
T  17120203 actaat 17120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 42555449 - 42555563
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataa 214  Q
    |||||||||||||||||||||| || |||||||||  || |||||||||||||||||||||||||| || |||||| |||||| |||| || ||||||||    
T  42555449 atcatattcaacaaaaacaaagcttattgcttcaacgatcccgaccactttcacttccttttaaagaagtgtaatataaatttgaacaatcatgtaataa 42555548  T
Q  215 ctaataacactcaca 229  Q
     |||||| |||||||    
T  42555549 gtaataatactcaca 42555563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 40714741 - 40714634
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| ||| ||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||  |||||||| |  |||||||||    
T  40714741 aactaataacactcacaatacttaggttttttgcttaaaaagttgaaaggtattaaagttatttatgtaatttactcggtttaatagcgagtatggatat 40714642  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  40714641 ccgcgggt 40714634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 23626975 - 23627093
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||| ||||||||||||  |||||||||||| ||| || || |||||||||| ||||| |||||| |||||||| ||||  ||| ||||||| ||    
T  23626975 catcatatttaacaaaaacaaaacttcttgcttcaacaatcccaactactttcactttcttttgaaggagtgtaatacagatttgcacaatcgtgtacta 23627074  T
Q  214 actaataacactcacaaca 232  Q
    |||||||||||||||||||    
T  23627075 actaataacactcacaaca 23627093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 51357304 - 51357413
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||||||||||||||| || ||| ||||| ||| |||||||||||||||  |||||||||||| ||| |||||| || || | ||||||||||    
T  51357304 catcatattcaacaaaaacaaagcttattgtttcaacaatcccgaccactttcactatcttttaaaggagtgtagtacaaacttgaataatcgtgtaata 51357403  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  51357404 actaataaca 51357413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 36464825 - 36464716
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||||||||||||||| ||  || ||||| ||| ||| |||||||||||  |||||||||||| |||||||||| || || || |||||||||    
T  36464825 catcatattcaacaaaaacaaagcttaatgtttcaacaatcccggccactttcactatcttttaaaggagtgtaatacaaacttgaatagccgtgtaata 36464726  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  36464725 actaataaca 36464716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 40714846 - 40714724
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaagga------gcgtaatacaaatttaaacagtcgt 207  Q
    ||||||||||||||||||||||| |||||||||||| |||   |  ||| |||||||||||||||||||      | |||||||| |||| |||| ||||    
T  40714846 catcatattcaacaaaaacaaagcttcttgcttcaacaatcttgttcacattcacttccttttaaaggagtacgtgtgtaatacagatttgaacaatcgt 40714747  T
Q  208 gtaataactaataacactcacaa 230  Q
    |||||||||||||||||||||||    
T  40714746 gtaataactaataacactcacaa 40714724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 8819302 - 8819197
Alignment:
Q  118 atattcaacaaaaacaaagtttctt-gcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataact 216  Q
    ||||||||||||||||||| || || ||||||| ||| |||||||||||||||  |||||||||||| |||||||||| || || ||| |||||||||||    
T  8819302 atattcaacaaaaacaaagcttatttgcttcaacaat-ccgaccactttcactatcttttaaaggagtgtaatacaaacttgaatagttgtgtaataact 8819204  T
Q  217 aataaca 223  Q
    |||||||    
T  8819203 aataaca 8819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 38951757 - 38951832
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| | |||||||||| ||| || |||||||||||||| ||||||||||||||||||    
T  38951757 catcatattcaacaaaaacaaagct-cttgcttcaacaatcccaaccactttcacttcattttaaaggagcgtaata 38951832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 23627074 - 23627150
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactc 308  Q
    ||||||||||||||||||||   |||||||||| |||| ||||||||| ||||||| ||||||||| ||||||||||    
T  23627074 aactaataacactcacaacatcaaggttttttgattagaaagttgaaaagtattaaggttatttatgtaatttactc 23627150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 41039469 - 41039544
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| || ||||| || ||||||||| |||||| |||||||||| ||||||||||||||||||||||    
T  41039469 catcatattcaacataagcaaagctt-ttgcttcaacaattccaaccactttcatttccttttaaaggagcgtaata 41039544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 43624581 - 43624656
Alignment:
Q  256 ggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    ||||||||| ||||||||||||| | |||||| ||||||||| ||||||||||  |||||||| || ||||||||||    
T  43624581 ggttttttg-ttaggaagttgaatgatattaaggttatttatgtaatttactcggtttaatagcgggtatggatatc 43624656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 17120193 - 17120103
Alignment:
Q  242 actcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    |||||||| || || ||||||||||||||||||| |||| ||||||  ||| |||| ||||||||||  |||||||  || ||||||||||    
T  17120193 actcacaataccgatgttttttgcttaggaagttcaaagatattaagattacttatgtaatttactcggtttaatatcgggtatggatatc 17120103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 19841940 - 19842026
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatag 318  Q
    |||||||||||||||||| ||  ||| ||||| ||||| || ||||| | |||||| ||||||||| ||||||||||  ||||||||    
T  19841940 aactaataacactcacaatacctagggttttttcttagaaaattgaatgatattaaggttatttatgtaatttactcggtttaatag 19842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 51357430 - 51357508
Alignment:
Q  254 gaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    ||||||||| |||||  || |||||||||||||| ||||||||| ||||||| ||  |||||||| || ||||||||||    
T  51357430 gaggtttttagcttaaaaatttgaaaggtattaaggttatttatgtaatttattcagtttaatagcgggtatggatatc 51357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 8819169 - 8819104
Alignment:
Q  274 ttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||||||||||||||||||||||| ||||||| |   |||||||| || |||||||||| ||||||    
T  8819169 ttgaaaggtattaatgttatttatgtaatttatttagtttaatagcgggtatggatatccgcgggt 8819104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 29117217 - 29117321
Alignment:
Q  235 taataacactcacaacactgaggttttttgcttaggaagttgaaaggtatta--atgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    ||||||||||||||| |  |||| |||||||||||||| ||||||| |||||   | |||||||| ||||||| ||  |||||||| ||| |||||||||    
T  29117217 taataacactcacaatatcgagggtttttgcttaggaaattgaaagttattaggttattatttatgtaatttattcagtttaatagcggaaatggatatc 29117316  T
Q  333 tgcgg 337  Q
     ||||    
T  29117317 cgcgg 29117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 42555570 - 42555622
Alignment:
Q  255 aggttttttgcttaggaagttgaaaggtattaatgttatttatataatttact 307  Q
    |||| |||| ||||||||||||||||||||||| | ||||||| |||||||||    
T  42555570 aggtgttttacttaggaagttgaaaggtattaaggatatttatgtaatttact 42555622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 22278460 - 22278524
Alignment:
Q  125 acaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||| | ||||| |||| |||  | |||||||||||||||||||||| ||||||||||    
T  22278460 acaaaaacaaagct-cttgcatcaaaaatctcaaccactttcacttccttttaaaagagcgtaata 22278524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 36464699 - 36464614
Alignment:
Q  254 gaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    ||||||||| |||||  || |||||||||||||| ||||||||| ||||||| ||  |||||||| |  || |||||| |||||||    
T  36464699 gaggtttttagcttaaaaatttgaaaggtattaaggttatttatgtaatttattcagtttaatagcgagtaaggatatttgcgggt 36464614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 19841865 - 19841940
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||| ||||| |||| |  |||| |||| ||| || |||| ||||||||||||||||| ||||||||||    
T  19841865 catcatattcaagaaaaataaagcta-ttgcatcaacaatcccaaccattttcacttccttttaaatgagcgtaata 19841940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 38951832 - 38951939
Alignment:
Q  232 aactaataacactcacaacac-tgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggata 330  Q
    |||| ||||||||||||| || | |||| |||| || ||||||||||| | |||| | ||||||||| |||||| |||  |||||||| |||||||||||    
T  38951832 aactgataacactcacaatacctaaggtgtttt-ctcaggaagttgaatgatattgaggttatttatgtaatttcctcggtttaatagcggatatggata 38951930  T
Q  331 tctgcgggt 339  Q
      |||||||    
T  38951931 aatgcgggt 38951939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 22519193 - 22519078
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataa 214  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||   ||||||||||||||| |||||||||||||    
T  22519193 atcatattcaacaaaaacaaagtttcttgtttcaacaatcccgaccactttcacttccttttaagggattttaatacaaatttaaatagtcgtgtaataa 22519094  T
Q  215 ctaataacactcacaa 230  Q
    |||||||| |||||||    
T  22519093 ctaataaccctcacaa 22519078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 337
Target Start/End: Complemental strand, 2944070 - 2943866
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||||||||| |||  || ||||||||| ||| |||| ||||||||||||||||||| | ||||||||||| |||| || |||| |||||||    
T  2944070 catcatattcaacaaaaataaatatttttgcttcaaaaatcccgatcactttcacttccttttaaggaagcgtaatacagatttgaatagtcatgtaata 2943971  T
Q  214 actaataacactcacaacaactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctattt 313  Q
    ||||||                   |||| |||||| || || | ||||||||||||||||||||| ||||||||||||||||| ||||||||||  |||    
T  2943970 actaat-------------------aacattcacaataccgatgatttttgcttaggaagttgaaatgtattaatgttatttatgtaatttactcggttt 2943890  T
Q  314 aatagtggatatggatatctgcgg 337  Q
    ||||| ||||||||||||| ||||    
T  2943889 aatagcggatatggatatccgcgg 2943866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 36298910 - 36299019
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||  |||||||||||  |||||||||| || ||| |||||||||||    
T  36298910 catcatattcaacaaaaacaaagcttattgcttcaacaatcccgaccactttcactatcttttaaaggaatgtaatacaaacttgaacggtcgtgtaata 36299009  T
Q  214 actaataaca 223  Q
    | ||||||||    
T  36299010 attaataaca 36299019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 1053083 - 1052974
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||||||| ||||||| | ||||||||| ||| |||||||| || |||  |||||||||||| |||||||||| || || | ||||||||||    
T  1053083 catcatattcaacaaagacaaagtctattgcttcaacaatcccgaccacgtttactatcttttaaaggagtgtaatacaaacttgaaaattcgtgtaata 1052984  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  1052983 actaataaca 1052974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 15953991 - 15953895
Alignment:
Q  236 aataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    |||||||||||||  || |||||||| |||||||||||||| ||  |||||| ||||||||| |||||||||| ||||||||| || ||||||||||    
T  15953991 aataacactcacattaccgaggttttatgcttaggaagttgcaaattattaaggttatttatgtaatttactcgatttaatagcgggtatggatatc 15953895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 30541406 - 30541300
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||| |||| | ||||||||| ||  ||||||  |||||||  ||||||||||||    
T  30541406 aactaataacactcacaataccaagggtttttgcttaggaagttgaaagttatt-aggttatttatgtatcttactcggtttaataacggatatggatat 30541308  T
Q  332 ctgcgggt 339  Q
    ||||||||    
T  30541307 ctgcgggt 30541300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 30541481 - 30541406
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||| ||||||||||| |||||| |||  | |||||||||||||||||||||||||| ||||||    
T  30541481 catcatattcaacaaaa-caaagtttcttacttcaacaatctcaaccactttcacttccttttaaaggagtgtaata 30541406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 38440406 - 38440331
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| | |||||| ||| ||| || ||||||||||||||||||| |||||||||||||    
T  38440406 catcatattcaacaaaaacaaagct-cttgctccaacaatcccaaccactttcacttccttttgaaggagcgtaata 38440331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 5973198 - 5973305
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||| ||||||||||||| ||  |||| ||||  ||||||||||||| | |||| | ||||||||| |||||||||| ||||||||| || |||||||||    
T  5973198 aactgataacactcacaatacctaggtgttttttttaggaagttgaatgatattgaggttatttatgtaatttactcgatttaatagcgggtatggatat 5973297  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  5973298 ccgcgggt 5973305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 31457399 - 31457464
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaa 179  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||||| |||||||||| ||||||||    
T  31457399 catcatattcaacaaaaacaaaacttcttgcttcaacaatcccgactactttcactttcttttaaa 31457464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 23809670 - 23809595
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| |||||||  || ||||||||| ||| || |||||||||| ||||||||||||||||||||||    
T  23809670 catcatattcaacataaacaaatctt-ttgcttcaacaatcccaaccactttcaattccttttaaaggagcgtaata 23809595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 1052957 - 1052883
Alignment:
Q  258 ttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||| ||  | |||||| || ||||||||||    
T  1052957 ttttttgcttaggaatttgaaaggtattaaggttatttatgtaatttattcggtataatagcgggtatggatatc 1052883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 36299032 - 36299086
Alignment:
Q  251 actgaggttttttgcttaggaagttgaaaggtattaatgttatttatataattta 305  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||    
T  36299032 actgaggttttttgcttaggaatttgaaatgtattaaggttatttatgtaattta 36299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 7767231 - 7767304
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    ||||| ||||||||||| || | |||||| ||||||||| ||||||||||  ||||||||||| ||||||||||    
T  7767231 ttttttcttaggaagttcaatgatattaaggttatttatgtaatttactcagtttaatagtgggtatggatatc 7767304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 11039181 - 11039106
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||| |||||||||| |  |||| |||| ||| || |||||||| ||||||||||||||||||||||||    
T  11039181 catcatattcaataaaaacaaagata-ttgcatcaacaatcccaaccacttttacttccttttaaaggagcgtaata 11039106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 11039102 - 11038999
Alignment:
Q  236 aataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgc 335  Q
    |||||||||||||| ||  | | ||||| |||||||||| ||| ||||||||  ||||||||  |||||||||  ||||||||  | |||||||||||||    
T  11039102 aataacactcacaatacgtatggttttttcttaggaagtggaatggtattaagcttatttatgaaatttactcggtttaatagccggtatggatatctgc 11039003  T
Q  336 gggt 339  Q
    ||||    
T  11039002 gggt 11038999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 15954082 - 15954014
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggag 183  Q
    ||||||| ||||||||| |||  |||||||||||| |||  ||| ||||||||||||||||||| ||||    
T  15954082 atcatatccaacaaaaataaaacttcttgcttcaacaatctcgatcactttcacttccttttaatggag 15954014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 22519084 - 22518993
Alignment:
Q  243 ctcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgc 335  Q
    ||||||| || |||||||||| ||||| |||||||||| ||||||  |||||||| ||||||| || ||||||||  |  |||||||||||||    
T  22519084 ctcacaataccgaggttttttccttag-aagttgaaagatattaagtttatttatgtaatttattcaatttaataacgtgtatggatatctgc 22518993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 5973136 - 5973198
Alignment:
Q  127 aaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||| || ||||||||| ||| || |||||||||| ||||||||||| ||||||||||    
T  5973136 aaaaacaaaggtt-ttgcttcaacaatcccaaccactttcaattccttttaaaagagcgtaata 5973198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 25502266 - 25502319
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcac 168  Q
    |||||||||||||||||||||||  ||||||||||| ||| || |||||||||||    
T  25502266 catcatattcaacaaaaacaaag-atcttgcttcaacaatcccaaccactttcac 25502319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 25502328 - 25502396
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttat--ttatataatttactctatttaatagtggatat 325  Q
    ||||| |||||||||||||| |||||| | |||||  ||| ||||||||||| ||||||||| ||||||    
T  25502328 ttttttcttaggaagttgaatggtattgaggttatatttacataatttactcgatttaatagcggatat 25502396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 38440273 - 38440228
Alignment:
Q  290 ttatttatataatttactctatttaatagtggatatggatatctgc 335  Q
    |||||||| ||||||||||  ||||||||||| |||||||||||||    
T  38440273 ttatttatgtaatttactcggtttaatagtgggtatggatatctgc 38440228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 14754000 - 14753968
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgctt 146  Q
    ||||||||| |||||||||||||||||||||||    
T  14754000 catcatatttaacaaaaacaaagtttcttgctt 14753968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 33189555 - 33189635
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    ||||| ||||||| |||||| |||||||| | ||||||| ||||||||||| | |||||  |||||||  |||| ||||||    
T  33189555 ttttttcttaggatgttgaatggtattaaggatatttatgtaatttactctgtgtaataacggatatgtttatccgcgggt 33189635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 47925070 - 47925110
Alignment:
Q  257 gttttttgcttaggaagttgaaaggtattaatgttatttat 297  Q
    |||||||||||| ||||||||||| |||||| |||||||||    
T  47925070 gttttttgcttaagaagttgaaagatattaaggttatttat 47925110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 2209666 - 2209774
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataa 214  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||| |||||||||||||||||||| | || |||||||||| |||||    
T  2209666 atcatattcaacaaaaacaaagcttcttgcttcaacaatcccgaccactttcccttcattttaaaggagcgtaatacatacttgaacagtcgtgcaataa 2209765  T
Q  215 ctaataaca 223  Q
    |||||||||    
T  2209766 ctaataaca 2209774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 26621578 - 26621679
Alignment:
Q  237 ataacactcacaacactgaggttttttg-cttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgc 335  Q
    ||||||||||||| || ||||||||||  ||||||||||||||||||||||| ||||||| | |||||||||| |||||||||| | ||||||||| |||    
T  26621578 ataacactcacaataccgaggttttttttcttaggaagttgaaaggtattaaggttatttgtgtaatttactcgatttaatagtaggtatggatatatgc 26621677  T
Q  336 gg 337  Q
    ||    
T  26621678 gg 26621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 42837644 - 42837719
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| ||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  42837644 catcatattcaacataaacaaagttt-ttgcttcaacaatcccaaccactttcacttccttttaaaggagcgtaata 42837719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 39207112 - 39207037
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| | ||| |||||| ||| || ||||||| |||||||||||||||||| ||||||    
T  39207112 catcatattcaacaaaaacaaagct-cttacttcaacaatcccaaccacttccacttccttttaaaggagtgtaata 39207037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 33742619 - 33742533
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatag 318  Q
    ||||||||||||| |||| ||  ||| | ||| |||||||||||||| | |||||| ||||||||| ||||||||||| ||||||||    
T  33742619 aactaataacacttacaatacctagggtgttttcttaggaagttgaatgatattaaggttatttatgtaatttactctgtttaatag 33742533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 3926437 - 3926511
Alignment:
Q  265 cttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||||||||||||| | |||| | ||||||||| |||||||||| |||| |||| || |||||||||| ||||||    
T  3926437 cttaggaagttgaatgatattgaggttatttatgtaatttactcgattttatagcgggtatggatatccgcgggt 3926511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 2209788 - 2209849
Alignment:
Q  257 gttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatag 318  Q
    |||| ||||||||||| ||||| | |||||| |||||||||| ||||||||| |||||||||    
T  2209788 gtttgttgcttaggaatttgaatgatattaaagttatttataaaatttactcgatttaatag 2209849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 26621487 - 26621542
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcactt 170  Q
    |||||||||| |||||| |||||||||||||||||| |||  |||||||||||||||    
T  26621487 catcatattctacaaaa-caaagtttcttgcttcaacaatctcgaccactttcactt 26621542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 42878902 - 42878870
Alignment:
Q  158 accactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||||||||||||||||||||||    
T  42878902 accactttcacttccttttaaaggagcgtaata 42878870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 3926329 - 3926404
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||  |||||||  || ||||||||| ||| || |||||||| ||||||||||||| |||| |||||    
T  3926329 catcatattcaacgtaaacaaaactt-ttgcttcaacaatcccaaccacttttacttccttttaaatgagcataata 3926404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 23429419 - 23429451
Alignment:
Q  158 accactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| |||||||||    
T  23429419 accactttcacttccttttaaagaagcgtaata 23429451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 31006143 - 31006251
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataa 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| | ||||||| | || ||||||| ||||||||    
T  31006143 atcatattcaacaaaaacaaagtttcttgcttcaacaattccggccactttcactttcttttaaaggaacataatacataattgaacagtcatgtaataa 31006242  T
Q  215 ctaataaca 223  Q
     ||||||||    
T  31006243 ataataaca 31006251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 6870624 - 6870512
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||||||||||||||  ||||||||| || |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||   ||||||||    
T  6870624 catcatattcaacaaaaacaaaacttcttgctttaacaattccgatcactttcacttccttttaaaggagcataatacagatttgaaca---gtgtaata 6870528  T
Q  214 actaataacactcaca 229  Q
    |||||||| |||||||    
T  6870527 actaataatactcaca 6870512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 28211835 - 28211728
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||||||||||||| |  || |||| |||||| |||||||||||||||||||||| ||||||||| |||||||||   |||||||| | ||||||||||    
T  28211835 aactaataacactcatagtaccgaggatttttgtttaggaagttgaaaggtattaaggttatttatgtaatttacttggtttaatagcgaatatggatat 28211736  T
Q  332 ctgcgggt 339  Q
    ||||||||    
T  28211735 ctgcgggt 28211728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 8227239 - 8227164
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| ||||||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||    
T  8227239 catcatattcaacataaacaaagttt-ttgcttcaacaatgtcaaccactttcacttccttttaaaggagcgtaata 8227164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 31006268 - 31006341
Alignment:
Q  258 ttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||| ||||  ||||||||  |||||||||||    
T  31006268 ttttttgcttaggaatttgaatggtattaaagttatttatataattcactcggtttaatagctgatatggatat 31006341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 7987198 - 7987123
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||| |||||||||||||||||||| ||||| |||| |||  | |||||||||| ||||||||||||||||||||||    
T  7987198 catcttattcaacaaaaacaaagtt-cttgcatcaacaatctcaaccactttcatttccttttaaaggagcgtaata 7987123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 7987123 - 7987016
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||||||||| |||||| ||  | ||||||| ||||  |||||||| |||||||| ||||||||| ||||||| ||  |||||||| || |||||||||    
T  7987123 aactaataacattcacaatacctatgtttttttcttaataagttgaatggtattaaggttatttatgtaatttattcggtttaatagcgggtatggatat 7987024  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  7987023 ccgcgggt 7987016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 8227156 - 8227054
Alignment:
Q  237 ataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcg 336  Q
    ||||||||||||| ||| ||| | ||| |||||||||||||| | |||| | ||||||||| ||||||||||  |||||||| || |||| ||||| |||    
T  8227156 ataacactcacaatacttagggtgttttcttaggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcgggtatgaatatccgcg 8227057  T
Q  337 ggt 339  Q
    |||    
T  8227056 ggt 8227054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 7968426 - 7968351
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||| ||||||||||||||| |||| ||||| |||| ||| || |||||||||| || |||||||||||||||||||    
T  7968426 catcttattcaacaaaaacatagtt-cttgcatcaacaatcccaaccactttcattttcttttaaaggagcgtaata 7968351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 9762847 - 9762747
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| |   ||| | ||| |||||||||||||| | |||||| ||||||||| ||||||| || ||||||||| |  |||||||||    
T  9762847 aactaataacactcacaatatctagggtgttttcttaggaagttgaatgatattaaggttatttatgtaatttattcgatttaatagcgagtatggatat 9762748  T
Q  332 c 332  Q
    |    
T  9762747 c 9762747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 9762922 - 9762847
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| |||||||  || ||||||||| ||| || |||||||| ||||| ||||||||||||||||||    
T  9762922 catcatattcaacataaacaaaactt-ttgcttcaacaatcccaaccacttttacttcattttaaaggagcgtaata 9762847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 36582898 - 36582823
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| | |||| ||||| ||| || ||||||||||||||| |||||| |||| |||||    
T  36582898 catcatattcaacaaaaacaaagct-cttgattcaacaatcccaaccactttcacttccatttaaatgagcataata 36582823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 11481552 - 11481627
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| |||||||  || ||||||||| ||| || |||| ||| |||| |||||||||||||||||||    
T  11481552 catcatattcaacataaacaaaaatt-ttgcttcaacaatcccaaccatttttactttcttttaaaggagcgtaata 11481627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 331
Target Start/End: Original strand, 11481627 - 11481726
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||| ||||||||||||| |   ||| | ||| |||||||||||||| | |||| | |||||||| |||||||||||  |||||||| || |||||||||    
T  11481627 aactgataacactcacaatatctagggtgttttcttaggaagttgaatgatattgaggttatttacataatttactcggtttaatagcgggtatggatat 11481726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 6870501 - 6870423
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttattt-atataatttactctatttaatagtggatatggatatctgcg 336  Q
    ||||||||||| ||||||||| ||||||| ||||||| || ||| ||||||  |||||||| || ||||||||| ||||    
T  6870501 tttttgcttagaaagttgaaatgtattaaagttatttaatttaacttactcggtttaatagcgggtatggatatatgcg 6870423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 48251508 - 48251397
Alignment:
Q  114 catcatattcaacaaaaacaaagttt-cttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaat 212  Q
    |||||||||||||||||||||| ||| | |||||||| ||| ||||||||||||||| ||||||| |||||||| |||||||||| ||||||||| ||||    
T  48251508 catcatattcaacaaaaacaaatttttcatgcttcaacaatcccgaccactttcactcccttttagaggagcgtgatacaaatttgaacagtcgtataat 48251409  T
Q  213 aactaataacac 224  Q
    ||||||||||||    
T  48251408 aactaataacac 48251397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 36584508 - 36584617
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||| ||| |  ||||||| || || ||| ||||||||    
T  36584508 catcatattcaacaaaaacaaagtttattgcttcaagaatcccgaccactttcactaccttttaaaagagtgcgatacaaacttgaaaagtggtgtaata 36584607  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  36584608 actaataaca 36584617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 26187996 - 26188086
Alignment:
Q  133 aaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaataactaataaca 223  Q
    |||||||||||||| ||  || |||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||| |||||||||||    
T  26187996 aaagtttcttgctttaactatcccgaccactttcacatccttttaaaagagcgtaatacagatttgaacagtcgtgtaacaactaataaca 26188086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 26188103 - 26188184
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggta 340  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||  | ||||||||| ||||||||||||||||||    
T  26188103 tttttgcttagaaagttgaagggtattaatgttatttatgtaatttactcagtataatagtgggtatggatatctgcgggta 26188184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 48251383 - 48251300
Alignment:
Q  257 gttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggta 340  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||||  |||||||| ||||||||||||  |||||||    
T  48251383 gttttttgcttaggaagtttaatggtattaaggttatttatctaatttactcggtttaatagcggatatggatatacgcgggta 48251300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 3778884 - 3778790
Alignment:
Q  245 cacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggta 340  Q
    ||||| ||| ||| ||||| |||||||||||||| | |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||| |||||||    
T  3778884 cacaatacttagggttttttcttaggaagttgaatgatattaaggttatttatgtaatttactctgtttaatagtgg-tatgaatatccgcgggta 3778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 13826261 - 13826368
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| ||  ||| | ||| |||||||||||||| | |||| | |||||| || ||||||||||  |||||||| || |||||||||    
T  13826261 aactaataacactcacaatacctagggtgttttcttaggaagttgaatgatattgaggttattaatgtaatttactcggtttaatagcgggtatggatat 13826360  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  13826361 ccgcgggt 13826368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 27926552 - 27926454
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| ||  ||||||||  |||||||||||||| |||||| | |||||||| |||||||| ||  |||||||| | |||| |||||    
T  27926552 aactaataacactcacaatacctaggttttt--cttaggaagttgaatggtattgaggttatttacataatttattcggtttaatagcgcatatagatat 27926455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 25874698 - 25874624
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||| |||||||||| | ||||||| || | | || |||||||||||||||||||||||||||||||||    
T  25874698 catcatattcaa-aaaaacaaagct-cttgctttaacattcccaaccactttcacttccttttaaaggagcgtaata 25874624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 5295343 - 5295419
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttc-aataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||||||||||||   |||||||| || |||  | ||||||||||| |||||||||||||||||||||    
T  5295343 catcatattcaacaaaaacaaagca-cttgcttccaacaatctcaaccactttcacatccttttaaaggagcgtaata 5295419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 21288300 - 21288407
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||| ||||||||||||| ||  ||| | ||| || ||||||||||| | |||| | ||||||||| |||||||||   |||||||| || |||||||||    
T  21288300 aactgataacactcacaatacctagggtgttttctcaggaagttgaatgatattgaagttatttatgtaatttacttggtttaatagcgggtatggatat 21288399  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  21288400 ccgcgggt 21288407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 36584642 - 36584708
Alignment:
Q  232 aactaataaca-ctcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttat 297  Q
    ||||||||||| ||||||  ||| |||||||||||||||||| |||||| | ||||| |||||||||    
T  36584642 aactaataacaactcacactactaaggttttttgcttaggaatttgaaaaggattaaggttatttat 36584708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 27926623 - 27926560
Alignment:
Q  118 atattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaagga 182  Q
    |||||||||||||||||||  |||| |||||| ||| || ||| |||||||||| ||||||||||    
T  27926623 atattcaacaaaaacaaag-ctcttacttcaacaatcccaacctctttcacttcattttaaagga 27926560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 28582275 - 28582390
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||||||| ||||||||| ||||||||| ||| |||||||| ||||||| |||||||||||| ||||| || |||| |  |||| |||||||    
T  28582275 catcatattcaacaaatacaaagttttttgcttcaaaaatcccgaccacgttcactttcttttaaaggagtgtaatgcatatttgactagtcatgtaata 28582374  T
Q  214 actaataacactcaca 229  Q
    ||||||||||||||||    
T  28582375 actaataacactcaca 28582390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 10408958 - 10408849
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||| |||| ||| ||||||| || |||||| |||||| |||||||| ||||||||||| |||||||| | |||||||| |||| ||||||||||    
T  10408958 catcatatttaacataaaaaaagtttttttcttcaacaattccaaccactttgacttccttttagaggagcgtgacacaaatttgaacaatcgtgtaata 10408859  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  10408858 actaataaca 10408849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 10408836 - 10408757
Alignment:
Q  258 ttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgg 337  Q
    |||||||||| |||||||||| |||||||| ||||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  10408836 ttttttgctttggaagttgaatggtattaacgttatttatgtaatttactcggtttaatagtgggtatggatatctgcgg 10408757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 35167281 - 35167205
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| ||||| |||||| |||  |  ||||||||||||||||||||||||||||||||    
T  35167281 catcatattcaacaaaaacaaagcttcttacttcaacaatcgcatccactttcacttccttttaaaggagcgtaata 35167205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 10788611 - 10788686
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| | ||||||| || ||| || ||||||||||||| |||||||||||||||||||    
T  10788611 catcatattcaacaaaaacaaagct-cttgcttaaacaatcccaaccactttcactttcttttaaaggagcgtaata 10788686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 642032 - 641957
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| ||||||| |||| |||||| |||| || ||||||| ||||||||||| |||||    
T  642032 catcatattcaacaaaaacaaagcttcttgcgtcaacaattccaaccatttccacttcc-tttaaaggagcataata 641957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 641949 - 641845
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||| || ||||| ||| || |||| ||||  |||||||||||||||| |||||  ||||||||| ||||||||||  |||||||| ||||||||||||    
T  641949 aactagtagcactcgcaataccgagggttttctcttaggaagttgaaagttattag-gttatttatgtaatttactcagtttaatagcggatatggatat 641851  T
Q  332 ctgcgg 337  Q
    | ||||    
T  641850 ccgcgg 641845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 8576948 - 8577048
Alignment:
Q  232 aactaataacactcacaacac-tgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggata 330  Q
    |||| ||||||||||||| || | |||| |||| |||||||||||||| | |||| | ||||||||||||||||||||  |||||||| || ||||||||    
T  8576948 aactgataacactcacaatacctaaggtgtttt-cttaggaagttgaatgatattgaggttatttatataatttactcggtttaatagcgggtatggata 8577046  T
Q  331 tc 332  Q
    ||    
T  8577047 tc 8577048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 28582401 - 28582481
Alignment:
Q  259 tttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||| | | |||||||| |  |||||||||||| ||||    
T  28582401 tttttgcttaggaagttgaaaggtatcaaaattatttatgtaatttattttgtttaatagcgagtatggatatctgagggt 28582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 7622540 - 7622619
Alignment:
Q  260 ttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||| ||||| |||||||| | |||||||||||||||  ||||||||||  |||||||| || |||||||||| ||||||    
T  7622540 tttttcttagaaagttgaatgatattaatgttatttacttaatttactcggtttaatagcgggtatggatatccgcgggt 7622619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 8576916 - 8576948
Alignment:
Q  158 accactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||||||||||||||||||||||    
T  8576916 accactttcacttccttttaaaggagcgtaata 8576948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 35167205 - 35167101
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||||||| ||||| || || || | |||||||||||||||||||||| || | | |||| |||| ||||||||||  |||| ||| || |||||||||    
T  35167205 aactaataatactcataataccgacgatttttgcttaggaagttgaaagttaat-aggttacttatgtaatttactcagtttagtagcgggtatggatat 35167107  T
Q  332 ctgcgg 337  Q
    | ||||    
T  35167106 ccgcgg 35167101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 2191809 - 2191700
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||| |||| |||| ||| |||||||||| || || | ||||||||||    
T  2191809 catcatattcaacaaaaacaaaacttcttgcttcaacaatcccgaccactttcactaccttctaaaagagtgtaatacaaacttgaaaaatcgtgtaata 2191710  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  2191709 actaataaca 2191700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 15378945 - 15379052
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    ||||||||||| ||||||  | || | |||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||| || |||||||||    
T  15378945 aactaataacaatcacaatgccgaagatttttgtttaggaagttgaaaggtattaaggttatttatgtaatttactcaatttaatagcgggtatggatat 15379044  T
Q  332 ctgcgggt 339  Q
    ||||||||    
T  15379045 ctgcgggt 15379052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 47140997 - 47141103
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| || |||| ||||| |||||||||||||| ||||||||  |||||||| |||||||||| ||||||||| || |||||||||    
T  47140997 aactaataacactcacaatac-gagggttttttcttaggaagttgaatggtattaagattatttatttaatttactcgatttaatagcgggtatggatat 47141095  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  47141096 ccgcgggt 47141103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 38264347 - 38264238
Alignment:
Q  115 atcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttcctttt-aaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |||| |||||| | | ||||| | || || |||| ||||||     
T  38264347 atcatattcaattaaaacaaagtttcttgcttcaacagttccgaccactttcacttctttttaaaaggaacattatacataattgaaaagtcatgtaatt 38264248  T
Q  214 actaataaca 223  Q
    ||||||||||    
T  38264247 actaataaca 38264238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 11894473 - 11894569
Alignment:
Q  236 aataacactcacaacac-tgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    |||||||||||||| || | |||||||||  ||||||||||||| | |||||| ||||||||| ||||||||||  ||||||||| | ||||||||||    
T  11894473 aataacactcacaatacataaggttttttt-ttaggaagttgaatgatattaaggttatttatgtaatttactcggtttaatagtcggtatggatatc 11894569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 36728743 - 36728684
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttcctt 174  Q
    ||||||||||||||||||||||| | |||||||||| ||| || |||||||||||||||||    
T  36728743 catcatattcaacaaaaacaaagct-cttgcttcaacaatcccaaccactttcacttcctt 36728684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 48379081 - 48379006
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| || ||||  || ||||||||| ||| || |||||||||| ||||||||||||||||||||||    
T  48379081 catcatattcaacataagcaaaactt-ttgcttcaacaatcccaaccactttcatttccttttaaaggagcgtaata 48379006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 2191687 - 2191603
Alignment:
Q  254 gaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||||||||| ||||| || |||||| ||||||| ||||||||| ||||||| ||  ||||||||  | |||||||||||||||||    
T  2191687 gaggtttttt-cttagaaatttgaaaagtattaaggttatttatgtaatttattcggtttaatagcaggtatggatatctgcgggt 2191603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 31585123 - 31585051
Alignment:
Q  267 taggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcgggt 339  Q
    |||||||||||| | |||| ||||||||||| ||||||| ||  |||||||| || |||||||||| ||||||    
T  31585123 taggaagttgaatgatattgatgttatttatgtaatttaatcggtttaatagcgggtatggatatccgcgggt 31585051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 47140922 - 47140997
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| ||||||  |||| ||| || || | ||||||||||| ||||| ||||||||||    
T  47140922 catcatattcaacaaaaacaaag-ttcttgggtcaacaatcccaactattttcacttcctattaaaagagcgtaata 47140997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 11894404 - 11894469
Alignment:
Q  124 aacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||| | ||||| |||| ||| || |||||||||||||||||||||| ||| ||||||    
T  11894404 aacaaaaacaaagct-cttgcatcaacaatcccaaccactttcacttccttttaaaagagtgtaata 11894469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 25987500 - 25987573
Alignment:
Q  116 tcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||||||||||  ||||||||||  ||| || |||| ||||| || |||||||| ||||||||||    
T  25987500 tcatattcaacaaaaacaaag-ctcttgcttcatcaatcccaaccattttcattttcttttaaaagagcgtaata 25987573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 17562676 - 17562611
Alignment:
Q  267 taggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatc 332  Q
    |||||||||||| | |||| ||||||||||| ||||||| ||  |||||||| || ||||||||||    
T  17562676 taggaagttgaatgatattgatgttatttatgtaatttaatcggtttaatagcgggtatggatatc 17562611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 29678309 - 29678249
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttt 175  Q
    ||||||||||||||||||||| |  ||||||||||| ||| |  ||||||||||||||||||    
T  29678309 catcatattcaacaaaaacaa-gactcttgcttcaacaatcctaaccactttcacttccttt 29678249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 5110343 - 5110418
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||||||||||||||||| || ||||||||| ||| || ||||||||||||| |||||||||||||||||||    
T  5110343 catcatattcaacaaaaacaaagctt-ttgcttcaacaatcccaaccactttcactttcttttaaaggagcgtaata 5110418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 13626308 - 13626233
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||| |||||||||||| | |||||||||| | | || |||||||||||||||||||||||||||||||||    
T  13626308 catcatattcgacaaaaacaaagct-cttgcttcaacattcccaaccactttcacttccttttaaaggagcgtaata 13626233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 13807680 - 13807755
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| |||||||| || ||||||||| ||| |  |||||||||||||| ||||||||||||||||||    
T  13807680 catcatattcaacataaacaaagctt-ttgcttcaacaatccaaaccactttcacttcattttaaaggagcgtaata 13807755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 5704807 - 5704914
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||||||||||||||||| ||  ||| | ||| |||||||||||||| | |||| | ||||||||| ||||||||||  ||||||||  |||||| ||||    
T  5704807 aactaataacactcacaatacctagggtgttttcttaggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcagatatgaatat 5704906  T
Q  332 ctgcgggt 339  Q
     |||||||    
T  5704907 ttgcgggt 5704914  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 339
Target Start/End: Original strand, 13807755 - 13807862
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatat 331  Q
    |||| ||||||||||||| ||  ||| | ||| |||||||||||||| | |||| | |||||||||||||||||||   |||||||| || |||||||||    
T  13807755 aactgataacactcacaatacctagggtgttttcttaggaagttgaatgatattgaggttatttatataatttacttggtttaatagcgggtatggatat 13807854  T
Q  332 ctgcgggt 339  Q
    | ||||||    
T  13807855 ccgcgggt 13807862  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 45151153 - 45151052
Alignment:
Q  237 ataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatttatataatttactctatttaatagtggatatggatatctgcg 336  Q
    ||||||||||||| || || || |||| || ||||||||||| | |||| | ||||||||| ||||||||||  |||||||| ||||||||||||||| |    
T  45151153 ataacactcacaataccgaagtgtttt-ctaaggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcggatatggatatctgtg 45151055  T
Q  337 ggt 339  Q
    |||    
T  45151054 ggt 45151052  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 31575936 - 31575862
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    |||||||||||||| |||| ||| || ||| ||||| ||| || |||||||||||||||||||||| ||||||||||    
T  31575936 catcatattcaacataaaccaagctt-ttgattcaacaatcccaaccactttcacttccttttaaa-gagcgtaata 31575862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 45151233 - 45151158
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaata 190  Q
    ||||||||| | || |||| |||||| ||||||||| ||| || ||||||||||||| ||| |||||||||||||||    
T  45151233 catcatatttagcataaaccaagttt-ttgcttcaacaatcccaaccactttcactttcttataaaggagcgtaata 45151158  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 45458407 - 45458345
Alignment:
Q  232 aactaataacactcacaacactgaggttttttgcttaggaagttgaaaggtattaatgttatt 294  Q
    |||||||||||||||||| || || ||||||  | || |||||||||||||||||| ||||||    
T  45458407 aactaataacactcacaataccgaagtttttgacctacgaagttgaaaggtattaaggttatt 45458345  T

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Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 66651 - 66757
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaaaggagcgtaatacaaatttaaacagtcgtgtaata 213  Q
    ||||||||||| ||||||||||  |||||||||||| | | ||||||||||||||| ||||||    ||| |||||||| |||| || | ||||||||||    
T  66651 catcatattcaccaaaaacaaaacttcttgcttcaacagtcccgaccactttcactacctttt-tttgagtgtaatacatatttgaaaaatcgtgtaata 66749  T
Q  214 actaataa 221  Q
    ||||||||    
T  66750 actaataa 66757  T

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Target: scaffold0155 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 6883 - 6820
Alignment:
Q  114 catcatattcaacaaaaacaaagtttcttgcttcaataattccgaccactttcacttccttttaa 178  Q
    |||||||||||||| |||| ||| || ||||||||| ||| || |||||||||||||||||||||    
T  6883 catcatattcaacataaacgaagctt-ttgcttcaacaatcccaaccactttcacttccttttaa 6820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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