View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15382_high_1 (Length: 436)

Name: NF15382_high_1
Description: NF15382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15382_high_1
NF15382_high_1
[»] chr4 (17 HSPs)
chr4 (99-425)||(48160189-48160533)
chr4 (1-104)||(48167351-48167454)
chr4 (56-187)||(48155520-48155643)
chr4 (213-289)||(48155165-48155242)
chr4 (101-187)||(43595926-43596011)
chr4 (249-295)||(48169654-48169700)
chr4 (101-153)||(45371134-45371186)
chr4 (55-149)||(48146910-48146998)
chr4 (245-291)||(48155425-48155471)
chr4 (95-153)||(48864923-48864981)
chr4 (102-144)||(49043378-49043420)
chr4 (213-290)||(48145315-48145391)
chr4 (104-153)||(48734500-48734549)
chr4 (1-50)||(48871458-48871507)
chr4 (1-50)||(48876762-48876811)
chr4 (1-50)||(48887144-48887193)
chr4 (392-428)||(48154222-48154258)
[»] chr6 (3 HSPs)
chr6 (61-356)||(14197012-14197318)
chr6 (347-415)||(14196546-14196614)
chr6 (107-144)||(21017301-21017338)
[»] chr5 (1 HSPs)
chr5 (102-153)||(29711600-29711651)
[»] chr1 (1 HSPs)
chr1 (101-153)||(24368009-24368062)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 99 - 425
Target Start/End: Complemental strand, 48160533 - 48160189
Alignment:
Q  99 taaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagattaccaaatctgctaaaggtggttgtcttattaatttcaattatgc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48160533 taaaattgttttatattgtaattaatttgatgagtttatgcatgttgatcaagattaccaaatctgctaaaggtgtttgtcttattaatttcaattatgc 48160434  T
Q  199 tttactgttactgtttttaatttcccctaaaaattgcaaaatctgcgacctgttctagattcattgcactagatttttcttaaaatatgc---------- 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              
T  48160433 tttactgttacagtttttaatttcccctaaaaattgcaaaatctgcaacctgttctagattcattgcactagatttttcttaaaatatgcttcacaagtg 48160334  T
Q  289 -------ttcataaagatgagatgacacccttctcccacaaaatttt-ctcttcctcttctttgatttgaaattaatgcagtaaaagaaaaagaaatcca 380  Q
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48160333 ttatggcttcataaagatgagatgacacccttctcccacaaaattttcctcttcctcttttttgatttgaaattaatgcagtaaaagaaaaagaaatcca 48160234  T
Q  381 tttgtttcctattaggatcctttcaatttcccctctccgcttctt 425  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  48160233 tttgtttcctattaggatcctttcaatttcccctctctgcttctt 48160189  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 48167454 - 48167351
Alignment:
Q  1 ttgacaactttaaatgtctgtgtgattcactgtaatttacgaatgtgtaagtgcaactggattgagttctaatgtatatgatgtggtgactgcttgctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48167454 ttgacaactttaaatgtctgtgtgattcactgtaatttacgaatgtgtaagtgcaactggattgagttctaatgtatatgatgtggtcactgcttgctta 48167355  T
Q  101 aaat 104  Q
    ||||    
T  48167354 aaat 48167351  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 48155643 - 48155520
Alignment:
Q  56 actggattgagttctaatgtatatgatgtggtgactgcttgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagatta 155  Q
    |||||||||||||||||||||| |  |||||| | ||||||    |||||||||||| || ||||| ||||  ||||||||||||||||  ||| |||||    
T  48155643 actggattgagttctaatgtatgt--tgtggtcattgcttg----aaattgttttattttttaatttattt--tgagtttatgcatgttggtcaggatta 48155552  T
Q  156 ccaaatctgctaaaggtggttgtcttattaat 187  Q
    ||||||||||||||||||||||||||||||||    
T  48155551 ccaaatctgctaaaggtggttgtcttattaat 48155520  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 48155242 - 48155165
Alignment:
Q  213 ttttaatttcccctaaaaattgcaaaatctgcgacctgttctagattcattgcactagatt-tttcttaaaatatgct 289  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||| ||||||| ||||||| ||| | ||||||||||    
T  48155242 ttttaatttcccctacaaattgccaaatctggtacctgttctagagtcattgcgctagattgtttttgaaaatatgct 48155165  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 43596011 - 43595926
Alignment:
Q  101 aaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagattaccaaatctgctaaaggtggttgtcttattaat 187  Q
    |||||||||||| |||||||| |||| | ||||||||||||||  | |||||| ||||||||| |||||| || |||| ||||||||    
T  43596011 aaattgttttattttgtaatttattttacgagtttatgcatgtataccaagatcaccaaatctactaaagatgtttgt-ttattaat 43595926  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 48169700 - 48169654
Alignment:
Q  249 tgttctagattcattgcactagatttttcttaaaatatgcttcataa 295  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  48169700 tgttctagagtcattgctctagatttttctaaaaatatgcttcataa 48169654  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 45371186 - 45371134
Alignment:
Q  101 aaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 153  Q
    ||||||||||||| ||||||| |||| |||| |||||||||||| ||||||||    
T  45371186 aaattgttttataatgtaatttattttatgaatttatgcatgttgatcaagat 45371134  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 48146998 - 48146910
Alignment:
Q  55 aactggattgagttctaatgtatatgatgtggtgactgcttgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatca 149  Q
    ||||||||||||||||||||||| |  |||||| ||||| ||    |||||||| |||||||||||| |||| |||||||| | |||||| ||||    
T  48146998 aactggattgagttctaatgtatgt--tgtggtcactgcctg----aaattgttctatattgtaatttattttatgagtttctacatgttgatca 48146910  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 48155471 - 48155425
Alignment:
Q  245 gacctgttctagattcattgcactagatttttcttaaaatatgcttc 291  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| ||||    
T  48155471 gacctgttctagagtcattgctctagatttttctgaaaatatccttc 48155425  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 48864923 - 48864981
Alignment:
Q  95 tgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 153  Q
    ||||| ||||||||||||||||||||| ||||| ||| | | |||||||| ||||||||    
T  48864923 tgcttgaaattgttttatattgtaatttatttgctgaatgtttgcatgttgatcaagat 48864981  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 49043420 - 49043378
Alignment:
Q  102 aattgttttatattgtaattaatttgatgagtttatgcatgtt 144  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  49043420 aattgttataaattgtaatttatttgatgagtttatgcatgtt 49043378  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 48145391 - 48145315
Alignment:
Q  213 ttttaatttcccctaaaaattgcaaaatctgcgacctgttctagattcattgcactagatttttcttaaaatatgctt 290  Q
    ||||||||||||| |||||||||||||| ||  || ||||||||| |  |||| ||| |||||||||| |||||||||    
T  48145391 ttttaatttcccc-aaaaattgcaaaatttggaacatgttctagagtggttgctctatatttttcttataatatgctt 48145315  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 48734549 - 48734500
Alignment:
Q  104 ttgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 153  Q
    ||||||||||  |||||| ||||||||| |||||||||||| ||||||||    
T  48734549 ttgttttataccgtaatttatttgatgaatttatgcatgttgatcaagat 48734500  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48871458 - 48871507
Alignment:
Q  1 ttgacaactttaaatgtctgtgtgattcactgtaatttacgaatgtgtaa 50  Q
    ||||||||||||| ||||||||||||||| ||| ||||  ||||||||||    
T  48871458 ttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaa 48871507  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48876762 - 48876811
Alignment:
Q  1 ttgacaactttaaatgtctgtgtgattcactgtaatttacgaatgtgtaa 50  Q
    ||||||||||||| ||||||||||||||| ||| ||||  ||||||||||    
T  48876762 ttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaa 48876811  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48887144 - 48887193
Alignment:
Q  1 ttgacaactttaaatgtctgtgtgattcactgtaatttacgaatgtgtaa 50  Q
    ||||||||||||| ||||||||||||||| ||| ||||  ||||||||||    
T  48887144 ttgacaactttaattgtctgtgtgattcaatgttatttgtgaatgtgtaa 48887193  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 48154258 - 48154222
Alignment:
Q  392 ttaggatcctttcaatttcccctctccgcttcttctc 428  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  48154258 ttaggatcctttccatttcccctctccgtttcttctc 48154222  T

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Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 61 - 356
Target Start/End: Complemental strand, 14197318 - 14197012
Alignment:
Q  61 attgagttctaatgtatatgatgtggtgactgcttgcttaaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagattaccaaa 160  Q
    ||||||||| || |||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14197318 attgagttccaaggtatatgatgtggtcactgctt----aaaattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagattaccaaa 14197223  T
Q  161 tctgctaaaggtggttgtcttattaatttcaattatgctttactgttactgtttttaatttcccctaaaaattgcaaaatctgcgacctgttctagattc 260  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  14197222 tctgctaaaggtgaatgtcttattaatttcaattatgctttactgttactgtttttaatttccc---taaattgcaaaatctgcgacctgttctagattc 14197126  T
Q  261 attgcactagatttttcttaaaatat-----------------gcttcataaagatgagatgacacccttctcccacaaaatttt-ctcttcctcttctt 342  Q
    ||||||||||||||||||||||||||                 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  14197125 attgcactagatttttcttaaaatatgcttcataagtgttatggcttcataaagatgagatgacacgcttctcccacaaaattttcctcttcctcttctt 14197026  T
Q  343 tgatttgaaattaa 356  Q
    ||||||||||||||    
T  14197025 tgatttgaaattaa 14197012  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 14196614 - 14196546
Alignment:
Q  347 ttgaaattaatgcagtaaaagaaaaagaaatccatttgtttcctattaggatcctttcaatttcccctc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14196614 ttgaaattaatgcagtaaaagaaaaagaaatccatttgtttcctattaggatcctttcaatttcccctc 14196546  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 21017301 - 21017338
Alignment:
Q  107 ttttatattgtaattaatttgatgagtttatgcatgtt 144  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21017301 ttttatattgtaatttatttgatgagtttatgcatgtt 21017338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 29711651 - 29711600
Alignment:
Q  102 aattgttttatattgtaattaatttgatgagtttatgcatgttcatcaagat 153  Q
    |||||||||||||| | ||| |||||||||||||||||||||| ||||||||    
T  29711651 aattgttttatattttcattgatttgatgagtttatgcatgttgatcaagat 29711600  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 24368009 - 24368062
Alignment:
Q  101 aaattgttttatattgtaa-ttaatttgatgagtttatgcatgttcatcaagat 153  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||| ||||||||    
T  24368009 aaattgttttatatggtaaattagtttgatgagtttatccatgttgatcaagat 24368062  T

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