View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15382_low_1 (Length: 437)
Name: NF15382_low_1
Description: NF15382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15382_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 160 - 418
Target Start/End: Complemental strand, 38003106 - 38002849
Alignment:
| Q |
160 |
aatcagtaaaatggataagccaagaaatgtcgagtaagaaaggctcaagagtcgtagtgtgggttgaagtgccacaaacaatctaaataataacatgagc |
259 |
Q |
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| T |
38003106 |
aatcagtaaaatgtataaaccaagaaatgtcgagtaagaaaggctcaagagtcatagtgttggttgaagcgccacaaacaatctaaataataacatgag- |
38003008 |
T |
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| Q |
260 |
taagaatcataattcacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaa----agacccaaaaagctcagtaaaaatagcaat |
355 |
Q |
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| T |
38003007 |
----aatcataatccacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaattaaagaccccaaaagctcagtaaaaatagcaat |
38002912 |
T |
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| Q |
356 |
gaaggttccaatatattacaatggaatcatttgatgaagctgtcaaatgaatctcagatgaag |
418 |
Q |
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| T |
38002911 |
gaaggttccaatatattacaatggaatcctttgatgaagctgtcaaatgaatctcagatgaag |
38002849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 38003773 - 38003738
Alignment:
| Q |
18 |
atcaaatcagttgctcaaactataacgacatattgg |
53 |
Q |
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| T |
38003773 |
atcaaatcagttgctcaaactataacgacatattgg |
38003738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 30970107 - 30970158
Alignment:
| Q |
102 |
gcaaggaaatcaacgcaagagttagcctccttataaatatgtttcaacgagac |
154 |
Q |
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| T |
30970107 |
gcaagaaaatcaacgcaagagttag-ctccctataaatatgcttcaatgagac |
30970158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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