View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15382_low_3 (Length: 431)
Name: NF15382_low_3
Description: NF15382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15382_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 26788897 - 26789291
Alignment:
| Q |
12 |
agaagcaaaggtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaattgatttttcccatgcataagatca |
111 |
Q |
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| T |
26788897 |
agaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgaatgtataagaatatgaagaattgatttttcccatgcataagatca |
26788996 |
T |
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| Q |
112 |
tagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatgattgaacacaaacaaaacaatatgtagataggtaagtact |
211 |
Q |
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| T |
26788997 |
tagcaaccacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatgattgaacacaaacaaaacaatatgtagataggtaagtact |
26789096 |
T |
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| Q |
212 |
taaatataactacaaaaagtgaattattaaatgctataagaaatactccatctggttttaaatatatataagaaagnnnnnnnncaatggactaaataca |
311 |
Q |
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| T |
26789097 |
taaatataactacaaaaagtgaattattaaatgctataagaaatactccatctggttttaaatcta-agaagaa---gaaaaaccaatggtctaaat--g |
26789190 |
T |
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| Q |
312 |
caaagacttttttgcttatatttgttgagaccatgagagttatattttacacgtatttttacctgtctacaattttaaatcgaagctttttgagttcttt |
411 |
Q |
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| T |
26789191 |
caaagacttttttgcttatatttgttgagaccatgagagtaatattttacacgtatttttacctgtctacaattttaaatcgaagctttttgagttcttt |
26789290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 26815739 - 26815980
Alignment:
| Q |
17 |
caaaggtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaattgatttttcccatgcataagatcatagca |
116 |
Q |
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| T |
26815739 |
caaaagtgccaacatatccaaatgccacgatgagaaaagcagtcgcttgcatgtataggaatatgaagaagtaatttttcccatacataaaatcatagca |
26815838 |
T |
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| Q |
117 |
accacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaatgattgaacacaaacaaaacaatatgtagataggtaagtactt--aa |
214 |
Q |
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| T |
26815839 |
gccacaaaataggaggtagaatccaacacaaagttctttcatgtgaatcctaatgattgaacacaaac--aacaatatgtaggtaggtaagtacttaaaa |
26815936 |
T |
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| Q |
215 |
atataactacaaaaagtgaattattaaatgctataagaaatactc |
259 |
Q |
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| T |
26815937 |
atataacta-aaaaagcgaattattaaatgttatatgaaatactc |
26815980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 26829261 - 26829414
Alignment:
| Q |
17 |
caaaggtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaattgatttttcccatgcataagatcatagca |
116 |
Q |
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|||| |||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
26829261 |
caaaagtgccaacatatccaaatgccatgatgaagaaagcaaacgcttggatgtataggaatatgaagaagtgatttttcccatacataagatcatagca |
26829360 |
T |
|
| Q |
117 |
accacaaaatagaaggtagaatccaacaaaaagttctgacaggtgaatcctaat |
170 |
Q |
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| T |
26829361 |
gccacataagaggaggtagaatccaacaacaagttctaacatgtgaatcctaat |
26829414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 26782599 - 26782743
Alignment:
| Q |
25 |
ccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaa |
124 |
Q |
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||||| |||||||| ||||||| |||||||||||| |||||||| |||| ||||||| || | | ||||||||||| ||||||||||||||| ||||||| |
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| T |
26782599 |
ccaacatatccaaaggccaggaggaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaa |
26782698 |
T |
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| Q |
125 |
atagaaggtagaatccaacaaaaagttctgacaggtgaatcctaa |
169 |
Q |
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| T |
26782699 |
ataggaggtagaatccaacaaaaagttctgacatgtgaatcctaa |
26782743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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