View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15382_low_4 (Length: 419)
Name: NF15382_low_4
Description: NF15382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15382_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 4246941 - 4246552
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4246941 |
ctaatggcaatcccttacattttctaacaatctctctaccagttttttggagatccgtcttctcggtggattgttcgggtgaaaggcatgcatggattgc |
4246842 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4246841 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatagaagcaactttatcactacgcgttgttacaaga |
4246742 |
T |
|
| Q |
218 |
atgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaact-tt |
316 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
4246741 |
attttgcttcccttagctccgtattgaagaggcatcataagagaattccaactgttataatccttgatccaaacatcgtccaaaacaatcaagaactttt |
4246642 |
T |
|
| Q |
317 |
ttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcct |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4246641 |
ttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactctgtgtaactgactccaatatagcct |
4246552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 4254060 - 4253667
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | || |||||||||||||| | ||||| |||| || ||| || |||||||||||||||||||| |
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|
| T |
4254060 |
ctaaaggcaatcccttacattttctaacaatctctttgccaattttttggagatccatgttctcagtggtttcttctggagaaaggcatgcatggtttgc |
4253961 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaat-aaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaag |
216 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||| |
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|
| T |
4253960 |
aaacaccgaccaacaatcttcatcagataattcatcaagagaattaaccttgaaaagtttggaccatagaagcaactttttcaatacgagttgttacaag |
4253861 |
T |
|
| Q |
217 |
aatgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaact-t |
315 |
Q |
| |
|
||| || |||||||||| ||||| |||||||| | | |||||||||||| |||| |||||||||| |||| ||||| ||||||||||| ||||||| | |
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|
| T |
4253860 |
aattttatttcccttagccccgtattgaagaggccttaaaagagaattccagctgtcataatcctcggtccatacatcatccaaaacaattaagaacttt |
4253761 |
T |
|
| Q |
316 |
tttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| ||| | |||||| |||||| | ||| |||||| ||||||||||| ||||||| |
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|
| T |
4253760 |
tttccagtcagtttttccttcaaatcacgatgaagcaactcgttgctgtttatgctacaagcattccctgtaacagactccaatatggcctttg |
4253667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 4314426 - 4314777
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| | || || |||| |||||| | ||||| ||| ||| || || |||||||||||||| ||| | |
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|
| T |
4314426 |
ctaaaggcaatcccttacattttctagcaatctctttgccaattatttgaagatccatattctcagtgtattcttttggagaaaggcatgcatgatttcc |
4314525 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| | ||| || |||||||||||| |
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|
| T |
4314526 |
aaacactgaccaacaatcttcatcagacaattgctcaagagagtaaccttgaaaagtttgtaccatacaagcaacttttttacttcgggttgttacaaga |
4314625 |
T |
|
| Q |
218 |
atgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaactt-t |
316 |
Q |
| |
|
|| || |||||| | | || | ||||||| | | ||| ||||||||| || |||||||||| |||||||||| ||||||||||| |||||||| | |
|
|
| T |
4314626 |
attttacttcccctggtgccatcatgaagaggtcttaaaagtgaattccaagcgtcataatcctcggtccaaacatcatccaaaacaattaagaacttct |
4314725 |
T |
|
| Q |
317 |
ttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttat |
368 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||| | |||||||| |
|
|
| T |
4314726 |
ttccagccagtttttccttcaaatctagatgaagcaactctatattatttat |
4314777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 4305564 - 4305944
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||| |||||||| | ||||||||||| ||||||| | || |||||||||| ||| | ||||| |||| |||| | |||||||||||||||||| | |
|
|
| T |
4305564 |
ctaaaggcaatccttgacattttctaataatctctttgccaattttttggagttccattttctcaatggagtgttttagagaaaggcatgcatggttttc |
4305663 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaaga |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||| ||||||||||| | | |||| |||||||||||| |
|
|
| T |
4305664 |
aaacacagaccaacaatcttcatcagacaattgctcaagagagtaaccttgaaaagtttgtagcatagaagcaacttttttaatacgggttgttacaaga |
4305763 |
T |
|
| Q |
218 |
atgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaactt-t |
316 |
Q |
| |
|
|| || ||||| || | | |||| |||||||| | | ||| || |||||| | ||||||||| ||||||| || ||||||||||| |||||||| | |
|
|
| T |
4305764 |
attttacttcctttgtcactgtactgaagaggccttaaaagggatttccaagcatcataatcctcagtccaaacgtcatccaaaacaattaagaacttct |
4305863 |
T |
|
| Q |
317 |
ttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactcca |
397 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| |
|
|
| T |
4305864 |
ttccggccagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctcca |
4305944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 41933503 - 41933123
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| | || |||||||||||||| | ||||| ||||| ||| || | ||| || ||||||||||| |
|
|
| T |
41933503 |
ctaaaggcaatccctgacattttctaacaatctctttgccaattttttggagatccattttctcaaaggattcttctggaggaagacaggcatggtttgc |
41933404 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaaga |
217 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| | | || | |||||||||||| |
|
|
| T |
41933403 |
aaacacggaccaacaatcttcttcagacaattgctcaagagagtaaccttgaaaagtttgtaccatagaagcaacttttttaatatgggttgttacaaga |
41933304 |
T |
|
| Q |
218 |
atgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaactt-t |
316 |
Q |
| |
|
|| || |||||||| | || || |||||||| | | ||||||||||||| | |||||||||| |||| | ||| || |||||||| |||||||| | |
|
|
| T |
41933303 |
attttacttcccttggtaccatattgaagaggccttaaaagagaattccaagcatcataatcctcggtccagaaatcatctaaaacaattaagaacttct |
41933204 |
T |
|
| Q |
317 |
ttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactcca |
397 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| |
|
|
| T |
41933203 |
ttccggacagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctcca |
41933123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 34802502 - 34802799
Alignment:
| Q |
18 |
ctaatggcaatcccttacattttctaacaatctctctatcagttttttggagatccgtcttctccgtggattgttcgggtgaaaggcatgcatggtttgc |
117 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||| | | |||||||| |||| | ||||| | |||| ||| || ||||| |||||||||||||| |
|
|
| T |
34802502 |
ctaaaggcagtcccttgcattttctaacaatctccttggcgtatttttggatatccatattctcagaagatttttctggagaaagacatgcatggtttgc |
34802601 |
T |
|
| Q |
118 |
aaacactgaccaacaatcttcatcagacaatttctcaagagaataaccttgaaaagtttggaccatggaagcaactttatcactacgcgttgttacaaga |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| | |||||| || ||| ||| |||||||||||| |
|
|
| T |
34802602 |
gaaaactgaccaacaatcttcatcagacaatatcttaagatggtaaggttgaaaagtttggaccatagtagcaacattttcaatacaggttgttacaaga |
34802701 |
T |
|
| Q |
218 |
atgttgcttcccttagctccgtacggaagaggcatcataagagaattccaactgttataatcctcgatccaaacatcgtccaaaacaatcaagaactt |
315 |
Q |
| |
|
|| || ||||| |||| |||| | ||| |||| | |||||| ||||||||||| ||||||||| |||| ||||| ||||| ||||| |||||||| |
|
|
| T |
34802702 |
attttacttcctttagttccgcattgaaaaggccttataagaatattccaactgtcataatcctcagtccagacatcatccaatacaattaagaactt |
34802799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 6059944 - 6059980
Alignment:
| Q |
104 |
catgcatggtttgcaaacactgaccaacaatcttcat |
140 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6059944 |
catgcatggtttgcaaacactaaccaacaatcttcat |
6059980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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