View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15382_low_8 (Length: 274)
Name: NF15382_low_8
Description: NF15382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15382_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 43533019 - 43532777
Alignment:
| Q |
14 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43533019 |
agagctttagatgttatctatgagctaggattggagaggtaaattaatgtttccactattagagtctcaaatatttttattatgagcttataaaagttat |
43532920 |
T |
|
| Q |
114 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532919 |
aatcatgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgag |
43532820 |
T |
|
| Q |
214 |
attataatcaatccttctcttctgtttcttgatgaaccaacat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532819 |
attataatcaatccttctcttctgtttcttgatgaaccaacat |
43532777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 24126561 - 24126699
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24126561 |
atgcatgaaaacaggtgccaagatactatgatcggtggttcatttgttcgtggagtatccggtggagagaggaagagagtttgtattggtaatgagatta |
24126660 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacat |
256 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24126661 |
taatcaatccttccattctgtttcttgatgaaccaacat |
24126699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 24144787 - 24144925
Alignment:
| Q |
118 |
atgcatggaaataggtgccaagacactatgataggaggttcctttgtccgaggagtatctggtggagagaggaagagagtttgtattggaaatgagatta |
217 |
Q |
| |
|
||||||| ||| ||||||||| | |||||||| || | ||| ||||| | ||| |||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
24144787 |
atgcatgaaaacaggtgccaaaatactatgattggtgattcgtttgttcccggattatctggtggagagaggaagagagtttgtattggcaatgagatca |
24144886 |
T |
|
| Q |
218 |
taatcaatccttctcttctgtttcttgatgaaccaacat |
256 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24144887 |
taatcaatccttccattctgtttcttgatgaaccaacat |
24144925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University