View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_high_4 (Length: 241)
Name: NF15383_high_4
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 16898605 - 16898779
Alignment:
| Q |
48 |
caaaaatcatcatgtttgaacctgaattgttgatccatgagagtgtgatccattttctgatgagtacgtacaagacacagacatgtttctggctgaaatg |
147 |
Q |
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| T |
16898605 |
caaaaatcatcatgtttgaacctgaattgttgatccatgagagtgtgatccattttttgatgagtacgtacaagacacagacatgtttctggctgaaatg |
16898704 |
T |
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| Q |
148 |
gataaacctaaagacaaatgttcggtggaagaagacggtacaatattccacaatttgggtttggaaaatgaagaa |
222 |
Q |
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| T |
16898705 |
gataaacctaaagacaaatgttcggtggaagaagacggtacaatattccacaatttgggtttggaaaatgaagaa |
16898779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 16901442 - 16901655
Alignment:
| Q |
9 |
ataattcttaatatgaaacagaacaaataaataaaagaacaaaaatcatcatgtttgaacctgaattgttgatccatgagagtgtgatccattttctgat |
108 |
Q |
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| T |
16901442 |
ataattctcattatgaaacaaaacaaataaattaaagaacaaaaatcatcatgtttgaacctgaattgatgatccttgagagtgaaatccattttctgat |
16901541 |
T |
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| Q |
109 |
gagtacgtacaagacacagacatgtttctggctgaaatggataaacctaaagacaaatgttcggtggaagaagacggtacaatattccacaatttgggtt |
208 |
Q |
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| T |
16901542 |
gagtagttacaagacacagacatgattcttgatgaagttgataagcctaaagacaaatgtttggtggaagaagatggtacaatattacataatttggttt |
16901641 |
T |
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| Q |
209 |
tggaaaatgaagaa |
222 |
Q |
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| T |
16901642 |
tggaaaatgaagaa |
16901655 |
T |
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