View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_low_1 (Length: 522)
Name: NF15383_low_1
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 155 - 505
Target Start/End: Complemental strand, 11178758 - 11178405
Alignment:
| Q |
155 |
gggggattcttaatatgagtaattttttcactacatgcacatacattcctgttacatattttaaagaaacaaaaaatttatacctgagagtgcaactaga |
254 |
Q |
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| T |
11178758 |
gggggattcttaatatgagtcatttttagactatatgtacatacattcatgttacatattttgaagaaacaaaaaaattatacctgagagtgcaactaga |
11178659 |
T |
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| Q |
255 |
tcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttgagctgcaagggaattatttgctg |
354 |
Q |
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| T |
11178658 |
tcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttgagctgcaagggaattatttgctg |
11178559 |
T |
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| Q |
355 |
ttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatttttgttgcattgtaggataataaagaaaatatatagcatggtt |
454 |
Q |
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| T |
11178558 |
ttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatttttgttgcattgtaggataataaagaaaatatatatcatggtt |
11178459 |
T |
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| Q |
455 |
tatgatgttaattaataaaattgaaattctat---gaacgtacactgtcacata |
505 |
Q |
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| T |
11178458 |
tatgatgttaattaataaaattgaaattctatgaagaacgtacattgtcacata |
11178405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 11178849 - 11178765
Alignment:
| Q |
19 |
ggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaaaaaat |
103 |
Q |
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| T |
11178849 |
ggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccaattgtatgaccacctaaaaaat |
11178765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 11172747 - 11172665
Alignment:
| Q |
19 |
ggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaaaaa |
101 |
Q |
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| T |
11172747 |
ggatttccagtattgctgaaattgtataatcgatcaacgaagaatctgcattgacctctaccgattgtatgagcacctaaaaa |
11172665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 233 - 409
Target Start/End: Complemental strand, 11172528 - 11172352
Alignment:
| Q |
233 |
tatacctgagagtgcaactagatcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttga |
332 |
Q |
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| T |
11172528 |
tatacctgaaagtgcaactagatctgtagcgtcgagaccttgattatcaaagttagatttcagttgagtaaggttgaaagctggacttggaagatttata |
11172429 |
T |
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| Q |
333 |
gctgcaagggaattatttgctgttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
409 |
Q |
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| T |
11172428 |
ttagcaagggttagatttgctgttaaactatctcttcttcctaatggcactttccaatcaggaccattagcctgcaa |
11172352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 11110534 - 11110473
Alignment:
| Q |
321 |
ggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
382 |
Q |
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| T |
11110534 |
ggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac |
11110473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 11097426 - 11097386
Alignment:
| Q |
348 |
tttgctgttaaactatcccttcttcctaatggaacttgcca |
388 |
Q |
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| T |
11097426 |
tttgctgttaaactatcccttcttcccaatggaatttgcca |
11097386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 11118469 - 11118423
Alignment:
| Q |
336 |
gcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
382 |
Q |
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| T |
11118469 |
gcaagggattgatttgctgttagactatcccttcttcccaatggaac |
11118423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 11183779 - 11183861
Alignment:
| Q |
16 |
tcaggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaa |
98 |
Q |
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| T |
11183779 |
tcaggatttttagtattgttcaaatcgtataatcgatcaacgaagaatccacattgacctctaccaattgtatgagcacctaa |
11183861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 11137279 - 11137227
Alignment:
| Q |
354 |
gttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctg |
406 |
Q |
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| T |
11137279 |
gttaaaccatcccttcttcctaagggaaccttccaattaggaccatctgcctg |
11137227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 11184243 - 11184295
Alignment:
| Q |
357 |
aaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
409 |
Q |
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| T |
11184243 |
aaactatctcttcttcctaatggaacttcccaatcaggaccatgagcctgcaa |
11184295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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