View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_low_2 (Length: 362)
Name: NF15383_low_2
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 3648419 - 3648194
Alignment:
| Q |
13 |
aacaaagggaaactttgtgtgaactctgtacaagctattattatgataaataataaagatcatgaaaatgggcctatttggactaatatcttaccttata |
112 |
Q |
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| T |
3648419 |
aacaaggggaaactttgtgtgaactctgtacaagctattattatgataaataataaagatcatgaaaatgggcctttttggactaatatcttaccttata |
3648320 |
T |
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| Q |
113 |
gcataagtgc-aatcgtataaaaaataaaattgaactactattgaagagccctcaccaaagagaacccttccaaaattagtgtatgtcgccaattgcaat |
211 |
Q |
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| T |
3648319 |
gcataagtgcttatcatataaaaaataaaattgaactactattgaagagccctcaacaaagaggacccttccaaaattagcgtatgccgctaattgcgac |
3648220 |
T |
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| Q |
212 |
actgacacaatattgtttaataaaag |
237 |
Q |
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| T |
3648219 |
actgacacagtattgtttaataaaag |
3648194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 3656361 - 3656197
Alignment:
| Q |
13 |
aacaaagggaaactttgtgtgaactctgtacaagctattattatgataaataataaagatcatgaaaatgggcctatttggactaatatcttaccttata |
112 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||| || ||||||||||| ||||||||||||||||||| |
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| T |
3656361 |
aacaaggggaaactttgtgtgaactctgtataagctattattatcataaa--ataa-gaccatgaaaatgga---------actaatatcttaccttata |
3656274 |
T |
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| Q |
113 |
gcataagtgc-aatcgtataaaaaat-aaaattgaactactattgaagagccctcaccaaagagaacccttccaaaa |
187 |
Q |
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| T |
3656273 |
gcataagtgcttatcctataaaaaataaaaattgaacgaacattgaagagccctcaacaaagaggactcttccaaaa |
3656197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 3648142 - 3648086
Alignment:
| Q |
234 |
aaagagtagatcactata-catcagcatcacacggctccgtgattattaacaatgta |
289 |
Q |
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| T |
3648142 |
aaagagtagatcgttatatcatcatcatcacacggctccgtgattattaacaatgta |
3648086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 3655987 - 3655955
Alignment:
| Q |
304 |
atgtgagcagcttagtttaattcatgtgttagc |
336 |
Q |
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| T |
3655987 |
atgtgagcagcttagtttaactcatgtgttagc |
3655955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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