View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_low_3 (Length: 357)
Name: NF15383_low_3
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 14577511 - 14577841
Alignment:
| Q |
14 |
atatctcagtgcgaaattgt----aagagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccacttgtcctcaccatgggtgacaatgag |
109 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14577511 |
atatctcagtgcgaaattgtctgaaagagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccgcttgtcctcaccatgggtgacaatgag |
14577610 |
T |
|
| Q |
110 |
gagatcattgataaattcaatggagtaaaagtatggtgggttgctaatcacacctctcaaaaagatttagatgataaaagttccttaacgctaaccttcc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14577611 |
gagatcattgataaattcaatggagtaaaagtatggtgggttgctaatcacacctctcaaaaagatttagatgataaaagttccttaacactaaccttcc |
14577710 |
T |
|
| Q |
210 |
acaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctattacaatgaagaacaggaagcttaaactatacac |
309 |
Q |
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| T |
14577711 |
acaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctattgcaatgaagaacaggaagcttaaactatacac |
14577810 |
T |
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| Q |
310 |
gaacaaccctagcgacgattggaggatatac |
340 |
Q |
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| T |
14577811 |
gaacaaccctagcgacgattggaggatatac |
14577841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 331
Target Start/End: Original strand, 2828430 - 2828728
Alignment:
| Q |
34 |
aagagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccacttgtcctcaccatgggtgacaatgaggagatcattgataaattcaatgga |
133 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| | ||| ||||| |||||||| ||||||||||||||| |
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| T |
2828430 |
aagagcaaaaagacttcgagccgaagttgtcgaaaatagtcaaactccacttgtccttaccattgatgataatgaagagatcatagataaattcaatgga |
2828529 |
T |
|
| Q |
134 |
gtaaaagtatggtgggttgctaatcacacctctcaaaaagattt-agatgataaaagttccttaacgctaaccttccacaaaaggtaccgtggtctcatc |
232 |
Q |
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| T |
2828530 |
gtcaaaatttggtgggttgctaactacacctcacaaaaaaaaatcaggtgaagaaacttccttaaccctaaccttccacaaaaaatatcgtgagcttatt |
2828629 |
T |
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| Q |
233 |
actacctcttacatacaatatgtgttggatgaaggaaaagctattacaatgaagaacaggaagcttaaactatacacgaacaaccctagcgacgattgg |
331 |
Q |
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| T |
2828630 |
actaggtcttatatccaacatgtgttagaacaaggaaaggctattacattgaagaataggaagcttaagctttataccaacaaccctagctacgattgg |
2828728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 2841938 - 2842048
Alignment:
| Q |
178 |
agatgataaaagttccttaacgctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
277 |
Q |
| |
|
|||||| ||||| | |||||| ||||| ||||| |||||| | |||| |||||||||||||||||||||||| |||| ||||| ||||||| ||||| |
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| T |
2841938 |
agatgagaaaagattcttaaccctaactttccataaaaggcatcgtgaactcatcactacctcttacatacaacatgttttggaacaaggaaaggctata |
2842037 |
T |
|
| Q |
278 |
acaatgaagaa |
288 |
Q |
| |
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||||||||||| |
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| T |
2842038 |
acaatgaagaa |
2842048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 2833850 - 2833721
Alignment:
| Q |
34 |
aagagccaaaagacttaatgctgaagttgtcgaaaatagtcaaaccccacttgtcctcaccatgggtgacaatgaggagatcattgataaattcaatgga |
133 |
Q |
| |
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|||||| | ||||||||| |||||||||||| || |||| |||| |||||||||||| | ||||| ||| ||||| || ||||| ||| | ||||||||| |
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| T |
2833850 |
aagagctagaagacttaaagctgaagttgtcaaagatagccaaaacccacttgtcctaagcatggatgataatgaagaaatcatagatgagttcaatgga |
2833751 |
T |
|
| Q |
134 |
gtaaaagtatggtgggttgctaatcacacc |
163 |
Q |
| |
|
|| ||||| |||||| ||||||| ||||| |
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| T |
2833750 |
gtcaaagtttggtggactgctaattacacc |
2833721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 2833682 - 2833582
Alignment:
| Q |
178 |
agatgataaaagttccttaacgctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
277 |
Q |
| |
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|||||| ||||| | |||||| ||||||||||| |||| | | |||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
2833682 |
agatgaaaaaagattcttaaccctaaccttccataaaaagcatcgtgaagtcatcactacctcttacattcaacatgtgttggatgaaggaaaatctatt |
2833583 |
T |
|
| Q |
278 |
a |
278 |
Q |
| |
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| |
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| T |
2833582 |
a |
2833582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 2860964 - 2860879
Alignment:
| Q |
193 |
cttaacgctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatta |
278 |
Q |
| |
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|||||| ||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| ||||||| |
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| T |
2860964 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctatta |
2860879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 2910391 - 2910255
Alignment:
| Q |
195 |
taacgctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctattacaatgaagaacaggaa |
294 |
Q |
| |
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|||| ||||||||| |||||||| | ||| ||||||||||||||| ||||| ||| ||||||| || |||||||| ||||| || |||||| ||| | |
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| T |
2910391 |
taaccctaaccttcgacaaaaggcatggtgatctcatcactacctcgtacatccaacatgtgttagaacaaggaaaacctattgcacagaagaagaggca |
2910292 |
T |
|
| Q |
295 |
gcttaaactatacacgaacaaccctagcgacgattgg |
331 |
Q |
| |
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||| || || ||||| ||||| || ||||| |||||| |
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| T |
2910291 |
gctaaagctttacactaacaaaccaagcgatgattgg |
2910255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 2885526 - 2885448
Alignment:
| Q |
200 |
ctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatta |
278 |
Q |
| |
|
||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| ||||||| |
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|
| T |
2885526 |
ctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctatta |
2885448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 2866343 - 2866266
Alignment:
| Q |
193 |
cttaacgctaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaa |
270 |
Q |
| |
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|||||| ||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| |
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| T |
2866343 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaa |
2866266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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