View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_low_5 (Length: 245)
Name: NF15383_low_5
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 11614875 - 11614666
Alignment:
| Q |
17 |
acatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgatttttacattgctaagctaatgacttgaaagagatgaaactctg |
116 |
Q |
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| T |
11614875 |
acatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgatttttacactgctaagctaatgacttgaaagagatgaaactctg |
11614776 |
T |
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| Q |
117 |
aactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11614775 |
aactggtgtatagtgtatcaaaaagtaaatgttaatctatcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtga |
11614676 |
T |
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| Q |
217 |
tgcagtgact |
226 |
Q |
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|||||||||| |
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| T |
11614675 |
tgcagtgact |
11614666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 13765398 - 13765278
Alignment:
| Q |
105 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
200 |
Q |
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| T |
13765398 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13765299 |
T |
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| Q |
201 |
attgtgatatctgtgatgcag |
221 |
Q |
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| T |
13765298 |
atggtgatatgtgtgatgcag |
13765278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 13751995 - 13751888
Alignment:
| Q |
105 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
200 |
Q |
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| T |
13751995 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13751896 |
T |
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| Q |
201 |
attgtgat |
208 |
Q |
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|| ||||| |
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| T |
13751895 |
atggtgat |
13751888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 13738566 - 13738513
Alignment:
| Q |
105 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagca |
158 |
Q |
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| T |
13738566 |
gatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagca |
13738513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 11606503 - 11606561
Alignment:
| Q |
164 |
tttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtgatgcagt |
222 |
Q |
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|||||||||||||||||| ||| || ||||||||| || ||||||| ||||||||||| |
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| T |
11606503 |
tttttgaatgaaatgttggcactaatgatttttgtgcatggtgatatgtgtgatgcagt |
11606561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 35080260 - 35080364
Alignment:
| Q |
120 |
tggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtgatgc |
219 |
Q |
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|||||||||| |||||||| |||||||||||||| |||| | | |||||||||||||||||| || || ||||||||| || |||||||||||||||| |
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| T |
35080260 |
tggtgtatagcgtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatatctgtgatgc |
35080359 |
T |
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| Q |
220 |
agtga |
224 |
Q |
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||||| |
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| T |
35080360 |
agtga |
35080364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 15607184 - 15607238
Alignment:
| Q |
98 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
152 |
Q |
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|||||||||||||||||| | || | |||||||||||||||||||||||||||| |
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| T |
15607184 |
tgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaat |
15607238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 15626105 - 15626159
Alignment:
| Q |
98 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
152 |
Q |
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|||||||||||||||||| | || | |||||||||||||||| ||||||||||| |
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| T |
15626105 |
tgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaatgttaat |
15626159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 15638704 - 15638758
Alignment:
| Q |
98 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
152 |
Q |
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|||||||||||||||||| | || | ||||| |||||||||||||||||||||| |
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| T |
15638704 |
tgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaatgttaat |
15638758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 15649865 - 15649919
Alignment:
| Q |
98 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
152 |
Q |
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|||||||||||||||||| | || | |||||||||||||| ||||||||||||| |
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| T |
15649865 |
tgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaatgttaat |
15649919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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