View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15383_low_7 (Length: 239)
Name: NF15383_low_7
Description: NF15383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15383_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 44459581 - 44459784
Alignment:
| Q |
22 |
ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag |
121 |
Q |
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| T |
44459581 |
ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttgaccacgacctgtag |
44459680 |
T |
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| Q |
122 |
tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459681 |
tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc |
44459780 |
T |
|
| Q |
222 |
cacc |
225 |
Q |
| |
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|||| |
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| T |
44459781 |
cacc |
44459784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 44467114 - 44467317
Alignment:
| Q |
22 |
ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag |
121 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44467114 |
ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttgaccacgacctgtag |
44467213 |
T |
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| Q |
122 |
tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467214 |
tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc |
44467313 |
T |
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| Q |
222 |
cacc |
225 |
Q |
| |
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|||| |
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| T |
44467314 |
cacc |
44467317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 38605822 - 38605687
Alignment:
| Q |
22 |
ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||| |||||||| | |||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
38605822 |
ctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtag |
38605723 |
T |
|
| Q |
122 |
tactcatatgatccatcaagcagcttctatctgtca |
157 |
Q |
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| || |||| ||||| ||||| ||||||||||||| |
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| T |
38605722 |
tgctgatatcatccaccaagcctcttctatctgtca |
38605687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 40181339 - 40181255
Alignment:
| Q |
24 |
gcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttga |
108 |
Q |
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|||||||| |||||||||| ||||| | |||| ||||| |||||||| |||||||||||| ||| || ||||||||||||| |
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| T |
40181339 |
gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttga |
40181255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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