View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15384_high_3 (Length: 360)
Name: NF15384_high_3
Description: NF15384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15384_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 27 - 346
Target Start/End: Complemental strand, 43327978 - 43327662
Alignment:
| Q |
27 |
tgcactgtcacatggtctgacatgtcatgccatgtcatacgggctaattaattcttgnnnnnnnaaattgnnnnnnnntggannnnnnncgtgcctatga |
126 |
Q |
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| T |
43327978 |
tgcactgccacatggtctgacatgtcatgccacgtcatacgggctaattaattcctgtttttttaaattgaaaaaaaatggatttttttcgttcctatga |
43327879 |
T |
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| Q |
127 |
gcaaatatctctcaaatttcacacttacgcgcaaaatacctattgaaattgnnnnnnntcaagtaaattggtccatgtggcgtacaatttttcttgtgct |
226 |
Q |
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| T |
43327878 |
gcaaatatctctcaaatttcacacttacgcgcaaaatacctattgaaattgacaaaaatcaagtaaattggtccaagtggcgtacaatttttcttttgct |
43327779 |
T |
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| Q |
227 |
ttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtacttaaatgaattacaat |
326 |
Q |
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| T |
43327778 |
ttaaaggattttgtgtaaggatttaatccttatga---gtagcagtaaattggagaagaatgatatagactgtatcgaatgtacttgaaggaattacaat |
43327682 |
T |
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| Q |
327 |
gaaaaggaaaattgtgtgtg |
346 |
Q |
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| T |
43327681 |
gaaaaggaaaattgtgtgtg |
43327662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 43327126 - 43327206
Alignment:
| Q |
228 |
taaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtact |
311 |
Q |
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| T |
43327126 |
taaaggatttggtgtaagggtttgatccttatga---gtagcaacaaattggagaagaatgatttagattgtattgaatgtact |
43327206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 43326454 - 43326498
Alignment:
| Q |
185 |
tcaagtaaattggtccatgtggcgtacaatttttcttgtgctttaa |
230 |
Q |
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| T |
43326454 |
tcaagcaaattggtccatgtggcgaacaa-ttttcttgtgctttaa |
43326498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 33882849 - 33882971
Alignment:
| Q |
213 |
atttttcttgtgctttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtactt |
312 |
Q |
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| T |
33882849 |
atttttcttgtggtttaatggatttggtgtaagggtttgatcttt---atgagtagcaataaattggaaaagaatgatatggatcatattaaatgtactt |
33882945 |
T |
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| Q |
313 |
aaatgaattacaatgaaaaggaaaat |
338 |
Q |
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| | |||||||||| |||||||||| |
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| T |
33882946 |
agaagaattacaattgaaaggaaaat |
33882971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 35995757 - 35995657
Alignment:
| Q |
212 |
aatttttcttgtgctttaaaggatttggtgtaaggatttaatccttatgatgagtagcagtaaattggagaagaatgatatagactgtatcgaatgtact |
311 |
Q |
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||||||||||||||||||| ||||||| |||||| ||| |||||| |||||||||| |||||||||||||| ||||| | ||||| ||||||| | |
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| T |
35995757 |
aatttttcttgtgctttaatggatttgctgtaagagtttgatcctt---atgagtagcaacaaattggagaagaaagatatgtattgtattgaatgtatt |
35995661 |
T |
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| Q |
312 |
taaa |
315 |
Q |
| |
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|||| |
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| T |
35995660 |
taaa |
35995657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 49138368 - 49138319
Alignment:
| Q |
277 |
tggagaagaatgatatagactgtatcgaatgtacttaaatgaattacaat |
326 |
Q |
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| T |
49138368 |
tggagaagaatgatatggattgtattgaatgtacttagaggaattacaat |
49138319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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