View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15384_high_4 (Length: 296)
Name: NF15384_high_4
Description: NF15384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15384_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 5563392 - 5563673
Alignment:
| Q |
17 |
ggatcgtagagaccattttgagctggtgtaacacactcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcact |
116 |
Q |
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| T |
5563392 |
ggatcgtagagaccattttgagctggtgtaacacactcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcact |
5563491 |
T |
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| Q |
117 |
caggatcttgcttcaacaaccaaggaaagtactttctatttc-nnnnnnnnacatactttttagttaatttcttagtttgtttctcattgcatgttcatt |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563492 |
caggatcttgcttcaacaaacaaggaaagtactttctatttctttttttttacatactttttagttaatttcttagtttgtttctcattgcatgttcatt |
5563591 |
T |
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| Q |
216 |
tcccttttattctgattttgag-nnnnnnnnnnnnnngggtctttgtcatttcctttctcattttgctccttttctcttcat |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563592 |
tcccttttattctgattttgagtttttttatttttttgggtctttgtcatttcctttctcattttgctccttttctcttcat |
5563673 |
T |
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