View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15384_low_1 (Length: 720)

Name: NF15384_low_1
Description: NF15384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15384_low_1
NF15384_low_1
[»] chr8 (7 HSPs)
chr8 (22-707)||(44459581-44460266)
chr8 (22-707)||(44467114-44467799)
chr8 (232-622)||(34502468-34502859)
chr8 (396-554)||(44459262-44459411)
chr8 (396-554)||(44466795-44466944)
chr8 (597-642)||(44459445-44459490)
chr8 (597-642)||(44466978-44467023)
[»] chr1 (1 HSPs)
chr1 (396-707)||(46358833-46359136)
[»] chr5 (7 HSPs)
chr5 (393-702)||(38605153-38605453)
chr5 (22-157)||(38605687-38605822)
chr5 (591-663)||(38605883-38605955)
chr5 (591-686)||(40180712-40180807)
chr5 (517-550)||(40180851-40180884)
chr5 (591-686)||(40181379-40181475)
chr5 (396-473)||(38606067-38606144)
[»] chr6 (2 HSPs)
chr6 (591-654)||(410775-410838)
chr6 (509-562)||(410678-410731)


Alignment Details
Target: chr8 (Bit Score: 646; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 22 - 707
Target Start/End: Original strand, 44459581 - 44460266
Alignment:
Q  22 ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag 121  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  44459581 ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttgaccacgacctgtag 44459680  T
Q  122 tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459681 tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc 44459780  T
Q  222 caccttcttactcctagtcctgatgaagacatagacgacgatttcactgcacccaaagatttccagactcagcttacatttcttggtggtattcctcgtc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459781 caccttcttactcctagtcctgatgaagacatagacgacgatttcacctcacccaaagatttccagactcagcttacatttcttggtggtattcctcgtc 44459880  T
Q  322 ctcattactatggttgtgtgtgcgcaaatgttaatttgactgactttaacactatgcgtcagcaactgcaccattttgtactcaaagttattgaaacctc 421  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459881 cgcattactatggttgtgtgtgcgcaaatgttaatttgacggactttaacactatgcgtcagcaactgcaccattttgtactcaaagttattgaaacctc 44459980  T
Q  422 ctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttatcaagatctc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459981 ctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttatcaagatctc 44460080  T
Q  522 atcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaatgacatattttttctgtggg 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44460081 atcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaacgacatattttttctgtggg 44460180  T
Q  622 aattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44460181 aattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatg 44460266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 22 - 707
Target Start/End: Original strand, 44467114 - 44467799
Alignment:
Q  22 ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag 121  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  44467114 ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctcttttgaccacgacctgtag 44467213  T
Q  122 tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44467214 tactcatatgatccatcaagcagcttctatctgtcagaagatgcttctgttcctccctcatcatcacgatgaagcagcttctatctgtcagaactacacc 44467313  T
Q  222 caccttcttactcctagtcctgatgaagacatagacgacgatttcactgcacccaaagatttccagactcagcttacatttcttggtggtattcctcgtc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44467314 caccttcttactcctagtcctgatgaagacatagacgacgatttcacctcacccaaagatttccagactcagcttacatttcttggtggtattcctcgtc 44467413  T
Q  322 ctcattactatggttgtgtgtgcgcaaatgttaatttgactgactttaacactatgcgtcagcaactgcaccattttgtactcaaagttattgaaacctc 421  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44467414 cgcattactatggttgtgtgtgcgcaaatgttaatttgacggactttaacactatgcgtcagcaactgcaccattttgtactcaaagttattgaaacctc 44467513  T
Q  422 ctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttatcaagatctc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44467514 ctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttggatgaggaggaacacttatcaagatctc 44467613  T
Q  522 atcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaatgacatattttttctgtggg 621  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44467614 atcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaacgacatattttttctgtggg 44467713  T
Q  622 aattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44467714 aattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatg 44467799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 232 - 622
Target Start/End: Complemental strand, 34502859 - 34502468
Alignment:
Q  232 ctcctagtcctgatgaagacatagacgacgatttcactgcacccaaagatttccagactcagcttacatttcttggtggtattcctcgtcctcattacta 331  Q
    ||||||||| |||||||||||| || || ||||||||||| |||||   |||||||| | |||| |||||||||||||||||||||||||| |||  |||    
T  34502859 ctcctagtcgtgatgaagacattgatgatgatttcactgctcccaatcgtttccagaatgagctcacatttcttggtggtattcctcgtccacatagcta 34502760  T
Q  332 tggttgtgtgtgcgcaaatgttaatttgactgactttaacactatgcgtcagcaactgcaccattttgtactcaaagttattgaaacctcctcacaaact 431  Q
    ||||| |||||||||||||||||||| |   ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  34502759 tggttttgtgtgcgcaaatgttaattcggacgacgttaaaactatgcgtcagcaactgcaccattttgtactcaaagttattgaagcctcttctcaaact 34502660  T
Q  432 aaattaattgaaaccccaaaggtttcgcctcataatcttatccac-tttataaagtgggcttggatgaggaggaacacttatcaagatctcatcactacc 530  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  34502659 aaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggcttggaggaggaggaacacttataaacatctcattactacc 34502560  T
Q  531 cctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgataatattcatctaaggaagaatgacatattttttctgtggga 622  Q
    | ||||||||||||||||||||||| ||||||| ||||||||   || ||||||||| ||||||||||||||||||| | ||||||||||||    
T  34502559 cttgttctggaatcccttgtttcagcaatatgtggtggttccgttgaagataatatttatctaaggaagaatgacatgtattttctgtggga 34502468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 554
Target Start/End: Original strand, 44459262 - 44459411
Alignment:
Q  396 tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttgga 495  Q
    |||| ||| ||||||||||||||||| |  |||||||||||  ||||| |||||||||||   ||||||||||||||| |||||||||||| || |||      
T  44459262 tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttg-- 44459359  T
Q  496 tgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttca 554  Q
     || ||  ||||      | || ||||||||||||||||||||||||||||||||||||    
T  44459360 -gaagaataaca------aggacctcatcactacccctgttctggaatcccttgtttca 44459411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 554
Target Start/End: Original strand, 44466795 - 44466944
Alignment:
Q  396 tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttgga 495  Q
    |||| ||| ||||||||||||||||| |  |||||||||||  ||||| |||||||||||   ||||||||||||||| |||||||||||| || |||      
T  44466795 tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttg-- 44466892  T
Q  496 tgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttca 554  Q
     || ||  ||||      | || ||||||||||||||||||||||||||||||||||||    
T  44466893 -gaagaataaca------aggacctcatcactacccctgttctggaatcccttgtttca 44466944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 642
Target Start/End: Original strand, 44459445 - 44459490
Alignment:
Q  597 aagaatgacatattttttctgtgggaattgcttaagcatattggcc 642  Q
    ||||| |||||| ||||||||||||| |||||||||| ||||||||    
T  44459445 aagaacgacatactttttctgtgggacttgcttaagcgtattggcc 44459490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 642
Target Start/End: Original strand, 44466978 - 44467023
Alignment:
Q  597 aagaatgacatattttttctgtgggaattgcttaagcatattggcc 642  Q
    ||||| |||||| ||||||||||||| |||||||||| ||||||||    
T  44466978 aagaacgacatactttttctgtgggacttgcttaagcgtattggcc 44467023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 8e-97; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 396 - 707
Target Start/End: Original strand, 46358833 - 46359136
Alignment:
Q  396 tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggcttgga 495  Q
    |||| ||| ||||||||||||||||| |  |||||||||||  ||||| |||||||||||   ||||||||||||||| |||||||||||| || |||||    
T  46358833 tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttgga 46358932  T
Q  496 tgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcg-tggttccaccgatgataatattcatctaa 594  Q
     ||  |   |||      | || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||    
T  46358933 agaata---aca------aggacctcatcactacccctgttctggaatcccttgtttcagaaatatgccgctggttccactgatgataatattcatctaa 46359023  T
Q  595 ggaagaatgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactc 694  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46359024 ggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactc 46359123  T
Q  695 ctttggattgatg 707  Q
    |||||||||||||    
T  46359124 ctttggattgatg 46359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 393 - 702
Target Start/End: Complemental strand, 38605453 - 38605153
Alignment:
Q  393 cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt 492  Q
    |||||| |||||||| |||||||||||||||  ||||||| |  | ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||    
T  38605453 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactttatcaagtgggctt 38605354  T
Q  493 ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttcc-accgatgataatattcatc 591  Q
       | |||||      | ||  | |||||||||||||||||||| ||||||| |||||||||| |||||| ||  ||||| ||  |   | || || | |    
T  38605353 ---ttaggag------taattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatg-cgatgttccaactaaatttgatgttgaac 38605264  T
Q  592 taaggaagaatgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctaca 691  Q
    ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||| |   ||||||  ||||||| ||||  ||||||||||||||||||| |    
T  38605263 taaggcagaatgacatactttttctgtgggacttgcttaaacatattggccattccgagactggtcttcttaacacccagattctcaatcaactcctaga 38605164  T
Q  692 ctcctttggat 702  Q
     || |||||||    
T  38605163 ttcatttggat 38605153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 38605822 - 38605687
Alignment:
Q  22 ctgcacttgaagtttttcatatgtttgatgcctttcggtgtgtcccaaatcactatacatattactttactcttcaagctcttttgaccacgacctgtag 121  Q
    |||||||||||||||||||||||||||| | |||||  ||||| ||||||||  | |||||||||||||| |||||||||||||||||||| || |||||    
T  38605822 ctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtag 38605723  T
Q  122 tactcatatgatccatcaagcagcttctatctgtca 157  Q
    | || |||| ||||| |||||  |||||||||||||    
T  38605722 tgctgatatcatccaccaagcctcttctatctgtca 38605687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 663
Target Start/End: Complemental strand, 38605955 - 38605883
Alignment:
Q  591 ctaaggaagaatgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttctta 663  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||| || | ||||||||    
T  38605955 ctaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttctta 38605883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 686
Target Start/End: Complemental strand, 40180807 - 40180712
Alignment:
Q  591 ctaaggaagaatgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactc 686  Q
    |||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |   |||||| |||  |||||||||||||||||    
T  40180807 ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattcttaacactcggattctcaatcaactc 40180712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 550
Target Start/End: Complemental strand, 40180884 - 40180851
Alignment:
Q  517 atctcatcactacccctgttctggaatcccttgt 550  Q
    ||||||||||||||||||||||||||||||||||    
T  40180884 atctcatcactacccctgttctggaatcccttgt 40180851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 686
Target Start/End: Complemental strand, 40181475 - 40181379
Alignment:
Q  591 ctaaggaagaatgacatatttttt-ctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactc 686  Q
    |||||||||||  ||||||||||| ||||||||  |||||||| ||||||||| |||| | |||||| ||||||   | |||||||||||| |||||    
T  40181475 ctaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaactc 40181379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 38606144 - 38606067
Alignment:
Q  396 tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatc 473  Q
    |||| ||||||||||||| ||||||| |  ||||| |||||| || ||||||||||||| || ||||| || ||||||    
T  38606144 tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatc 38606067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 654
Target Start/End: Original strand, 410775 - 410838
Alignment:
Q  591 ctaaggaagaatgacatattttttctgtgggaattgcttaagcatattggccactatcagactg 654  Q
    |||||||||||||||||| ||||| |||| || ||||||||||||||||||||| |||||||||    
T  410775 ctaaggaagaatgacataatttttatgtgagacttgcttaagcatattggccaccatcagactg 410838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 410678 - 410731
Alignment:
Q  509 ttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg 562  Q
    |||| |||||||  ||||||||||||||||||| |||||| |||||| ||||||    
T  410678 ttataaagatcttgtcactacccctgttctggagtcccttatttcagcaatatg 410731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University