View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15384_low_2 (Length: 542)
Name: NF15384_low_2
Description: NF15384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15384_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 10 - 542
Target Start/End: Original strand, 36825075 - 36825607
Alignment:
| Q |
10 |
gcagcagagacaggttaggattaaaggagaaagcaatggaaaatgaatcatcggctcccaattcgcatgatttcatctgcccaatctgccttggaccctt |
109 |
Q |
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| T |
36825075 |
gcagcagaaacaggttaggattaaaggagaaagcaatggaaaatgaatcatcggctcccaattcgcatgattccatctgcccaatctgccttggaccctt |
36825174 |
T |
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| Q |
110 |
cattcaaccttcctacctcgatcactgtttacaccaattttgcttcaattgcattttacgctggatcaaagttgtttctggaaaacaccaccatactcct |
209 |
Q |
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| T |
36825175 |
cattcaaccttcctacctcgatcactgtttacaccaattttgcttcaattgcattttacgctggatcaaagttgtttctggaaaacactaccatactcct |
36825274 |
T |
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| Q |
210 |
ccaccttcttcttctgttaaatgccccctttgtaaggtttgcttatttctctctctccaccttagttatattagtaatttcatttatctatcatactatt |
309 |
Q |
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| T |
36825275 |
ccaccttcttcttctgttaaatgccccctttgtaaggtttgcttatttctctctctccaccttagttatattagtaatttcatttatctatcatactaat |
36825374 |
T |
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| Q |
310 |
ctctatgattatgcagacagataatttttctatcatacatggaatagatggtacttgctttcaacgccattatataaataccaatcttcaagatgattgg |
409 |
Q |
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| T |
36825375 |
ctctatgattatgcagacagataatttttctatcatacatggagtagatggtacttgctttcaacgccattatataaataccaatcttcaagatgattgg |
36825474 |
T |
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| Q |
410 |
tttgtttcactatcacttgcttttattcttaaactatctagtacaaattattacaatcattttataatttgcacttatatttgtccttgcagttttgttt |
509 |
Q |
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| T |
36825475 |
tttgtttcactatcacttgcttttatttttaaactatctagtacaaattattacaatcattttataatttgcacttatatttgtccttgcagttttgttt |
36825574 |
T |
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| Q |
510 |
tgtcaagagcacacagatatagattacaatgct |
542 |
Q |
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| T |
36825575 |
tgtcaagagcacacagatatagattacaatgct |
36825607 |
T |
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