View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15384_low_3 (Length: 486)
Name: NF15384_low_3
Description: NF15384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15384_low_3 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 26374868 - 26375281
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgtttcccttcttccttaccatgacaagattaaaacaaataagaaagttttatgaaaataaaatctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26374868 |
actatccattgtactgtgctctccaagtgtgcttgtttcccttcttccttaccatgacaagattaaaacaaataagaaaattttatgaaaataaaatctt |
26374967 |
T |
|
| Q |
118 |
attaatttttatttttgaacaaatnnnnnnnnntcttattaatagaggttccattgataaggtgaatgaatcggatacattatagtttatctgcttgttt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374968 |
attaatttttatttttgaacaaatcaaaaaaaatcttattaatagaggttccattgataaggtgaatgaatcggatacattatagtttatctgcttgttt |
26375067 |
T |
|
| Q |
218 |
tgatgtgtttagacgt-caacagagcaaatatttttaacatatgaaagtttaatcatcattatatgttcatgattacaaaatgtcctttcttcacttgat |
316 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26375068 |
tgatgtgcttagacgttcaacagagcaaatatttttaacatatgaaagtttaatcatcattatatgttcatgattacaaaatgtcctttcttcacttgat |
26375167 |
T |
|
| Q |
317 |
agttggcaccaatgatttaactttacaacatgaattttgaagcaagataaaaagattgggaatgttggtggtaacaaaaacaaaattcacaattataact |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26375168 |
agttggcaccaatgatttaactttacaacatgaattttgaagcaagataaaaagattgggaatgttggtggtaacaaaaacaaaattcacaattataact |
26375267 |
T |
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| Q |
417 |
tgtaaatgtggttt |
430 |
Q |
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|||||||||||||| |
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| T |
26375268 |
tgtaaatgtggttt |
26375281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40519259 - 40519198
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgtttc-ccttcttccttaccatgacaag |
78 |
Q |
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| T |
40519259 |
actatccattgtactgcgctctccaagtgtgcttgtttcaccttcttccttcccatgacaag |
40519198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 186184 - 186245
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag |
78 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
186184 |
actatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag |
186245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 163122 - 163169
Alignment:
| Q |
76 |
aagattaaaacaaataagaaagttttatgaaaataaaatcttattaat |
123 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
163122 |
aagaataaaataaataagaaaactttatgaaaataaaatcttattaat |
163169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 491326 - 491265
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag |
78 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
491326 |
actatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag |
491265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 18344210 - 18344163
Alignment:
| Q |
76 |
aagattaaaacaaataagaaagttttatgaaaataaaatcttattaat |
123 |
Q |
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|||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
18344210 |
aagaataaaataaataagaaaattttatgaaaataaaatcttattaat |
18344163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 13222849 - 13222910
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag |
78 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
13222849 |
actatccattgtactgcgctctccaagtgtgcttgtttccccttcttccttcccatgacaag |
13222910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 3856405 - 3856344
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag |
78 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3856405 |
actatccattgtactgctctctccaagtgtgcttgtttccccttcttccttaccatgacaag |
3856344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34654654 - 34654593
Alignment:
| Q |
18 |
actatccattgtactgtgctctccaagtgtgcttgttt-cccttcttccttaccatgacaag |
78 |
Q |
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||||||||||||| || |||||||| |||||||||||| |||||||||||| |||||||||| |
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| T |
34654654 |
actatccattgtattgcgctctccatgtgtgcttgtttccccttcttccttcccatgacaag |
34654593 |
T |
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