View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15385_high_2 (Length: 410)
Name: NF15385_high_2
Description: NF15385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15385_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 129 - 395
Target Start/End: Original strand, 44007284 - 44007550
Alignment:
| Q |
129 |
atttgttcattttaacgtgttattacatactgatcaggtacactttcaagagcataagtcttcttcgtcgtgcaatgactcacgcttctttctctgaaga |
228 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44007284 |
atttgttcattttaacgtgttgttacatactgatcaggtacactttcaagagcataagtcttcttcgtcgtgcaatgactcacgcttctttctctgaaga |
44007383 |
T |
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| Q |
229 |
aaacaacaaagctttcagcattttgggtgctacaatcattgaaacatctgtttctttcaatttgctttcgaaagaagttgatatttccgccaaagagttg |
328 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
44007384 |
aaacaacaaagctttcagcattttgggtgctacaagcattgaaacatctgtttctttcaatttgctttcgaaagacgttgatatttccgctaaagagttg |
44007483 |
T |
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| Q |
329 |
aaccgtcgactatccttaatttccaacgtcgactcttcttgtgctgttgatgcaaaacgtttgggtt |
395 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44007484 |
aaccgtcgactatccttaatctccaacgtcgactcttcttgtgctgttgatgcaaaacgtttgggtt |
44007550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 129 - 324
Target Start/End: Complemental strand, 30586235 - 30586040
Alignment:
| Q |
129 |
atttgttcattttaacgtgttattacatactgatcaggtacactttcaagagcataagtcttcttcgtcgtgcaatgactcacgcttctttctctgaaga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30586235 |
atttgttcattttaacgtgttattacatactgatcaggtacactttcaagagcataagtcttcttcgtcgtgcaatgactcacgcttctttctctgaaga |
30586136 |
T |
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| Q |
229 |
aaacaacaaagctttcagcattttgggtgctacaatcattgaaacatctgtttctttcaatttgctttcgaaagaagttgatatttccgccaaaga |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
30586135 |
aaacaacaaagctttcagcattttgggtgctacaatcattgaaacatctgtttctttcaatttgctttcgaaagacgttgatatttccgctaaaga |
30586040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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