View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15385_high_3 (Length: 331)
Name: NF15385_high_3
Description: NF15385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15385_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 5482880 - 5482576
Alignment:
| Q |
17 |
tatatgtttctctatcttgtgatacactgtatttattttagttgctttccatatatcccnnnnnnnngtcccaatgaatcatgtatgggaggaaattcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
5482880 |
tatatgtttctctatcttgtgatacactgtatttattttagttgctttccatatatcccttttttt-gtctcaatgaatcatgtatgggaggaaattcaa |
5482782 |
T |
|
| Q |
117 |
aatgaaaactaattcatatgatgaaaatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccactttataactgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5482781 |
aatgaaaactaattcatatgatgaaaatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccactttataagtgat |
5482682 |
T |
|
| Q |
217 |
tgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatgat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5482681 |
tgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatgat |
5482582 |
T |
|
| Q |
317 |
gatgtc |
322 |
Q |
| |
|
|||||| |
|
|
| T |
5482581 |
gatgtc |
5482576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 5488307 - 5488006
Alignment:
| Q |
17 |
tatatgtttctctatcttgtgatacactgtatttattttagttgctttccatatatcccnnnnnnnngtcccaatgaatca--tgtatgggaggaaattc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||| | | | |||||||||||||||||||||||| ||| |||| |||| || |||||| |||| || |
|
|
| T |
5488307 |
tatatgtttctctatcttgtgacacactatttattttttagttgctttccatatatcccttttttgggtctcaataaatctactgcatgggaagaaactc |
5488208 |
T |
|
| Q |
115 |
aaaatgaaaactaattcatatgatgaaaatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccactttataactg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5488207 |
aaaatgaaaactaattcatatgatgatactaatttaaaatgaactccacacttaccaacacacaaaataaatcaatcaatcaaaatccacattata---- |
5488112 |
T |
|
| Q |
215 |
attgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatg |
314 |
Q |
| |
|
| || ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||| |||| |
|
|
| T |
5488111 |
agtgttgagcttactcatgttgtaactttgatgtcattttaggcatggaaactatggattgaagaaagaccactggagttaatagctgacgtattatatg |
5488012 |
T |
|
| Q |
315 |
atgatg |
320 |
Q |
| |
|
|||||| |
|
|
| T |
5488011 |
atgatg |
5488006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 5501122 - 5500823
Alignment:
| Q |
17 |
tatatgtttctctatcttgtgatacactgtatttattttagttgctttccatatatcccnnnnnnnngtcccaatgaatcatgt--atgggaggaaattc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||| ||| |||| |||| | | |||||| | ||||| |
|
|
| T |
5501122 |
tatatgtttctctatcttgtgacacactgtatcctttttagttgcttttcttatatccctttttttggtctcaataaatcttctgcatgggaaggaattc |
5501023 |
T |
|
| Q |
115 |
aaaatgaaaactaattcatatgatgaaaatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccactttataactg |
214 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5501022 |
aaaatgaaaactaatttatatgatgatgatagtttaaagtgaactccacacatactaacacac--aataaatcaatcaatcaaaatccacattata---- |
5500929 |
T |
|
| Q |
215 |
attgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatg |
314 |
Q |
| |
|
| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||| |
|
|
| T |
5500928 |
agtgttgagcttactcatgttgtaactttgatgtcattttaggcatggagactatggattgaagaaagaccactggagttaatagctgacgtattatatg |
5500829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 108 - 320
Target Start/End: Complemental strand, 5523899 - 5523691
Alignment:
| Q |
108 |
gaaattcaaaatgaaaactaattcatatgatgaaaatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccacttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| || |
|
|
| T |
5523899 |
gaaattcaaaatgaaaactaattcataccatgataattgtttaaagtgaactccacacataccagcacacaaaataaaccaatcaatcaaaattcacatt |
5523800 |
T |
|
| Q |
208 |
ataactgattgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacata |
307 |
Q |
| |
|
||| || || ||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
5523799 |
atatgtgttt----agcttactcatgttgtaactttgatgtcatttaaggcatggaaactatggattgaagaaagaccactggagttaatagcagacata |
5523704 |
T |
|
| Q |
308 |
tcgtatgatgatg |
320 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5523703 |
ttatatgatgatg |
5523691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 20341760 - 20341612
Alignment:
| Q |
166 |
atacctacacacaaaataaatcaatcaatcaaaatccactttataactgattgatgagctttctcttgttgtaactttgatgtcattttaggcatggaga |
265 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||| ||| | || ||||||| ||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
20341760 |
atacatacacaagaaataaaccaatcaatcaaaatccacttcata----aatgttgagcttactctttttgtaaccttgatgtcattttaggcatggaga |
20341665 |
T |
|
| Q |
266 |
ctatggattgaaggaaggacactggagttaatagctgacatatcgtatgatga |
318 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
20341664 |
ctatggattgaagaaagggcaaaggagttaatagctgacatatcatatgatga |
20341612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 306
Target Start/End: Complemental strand, 5452941 - 5452748
Alignment:
| Q |
109 |
aaattcaaaatgaaaactaattcatatgatgaa-aatagtttaaagtgaactccacacatacctacacacaaaataaatcaatcaatcaaaatccacttt |
207 |
Q |
| |
|
|||||||||| ||| | | |||||||| ||||| |||| || ||||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5452941 |
aaattcaaaaggaatatttattcatatcatgaataataattgaaagtagactccacacatacatacactaaaaataaatcaatcaaccaaaatccacttt |
5452842 |
T |
|
| Q |
208 |
ataactgattgatgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacat |
306 |
Q |
| |
|
||| |||||| |||| |||| |||||| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
5452841 |
atag--gattga---gcttactctgtctgtaaccttgatgtcattttaggcatggagactgtggattgaaggcaggccagaggagttaatagctgacat |
5452748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 5830221 - 5830306
Alignment:
| Q |
235 |
tgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatgatgatg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5830221 |
tgtaactttgatgtttctttaggcatggcgattatggattgaagaaaggtcactggagttcatagctgacatatcgtatgatgatg |
5830306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 5856077 - 5856148
Alignment:
| Q |
237 |
taactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||| |
|
|
| T |
5856077 |
taactttgatgtcattttaggcatggagactatggattgaagaaagaccactagagttaatagcagacatat |
5856148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 5804461 - 5804517
Alignment:
| Q |
220 |
tgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattga |
276 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5804461 |
tgagcttactcttactataactttgatgtcattttaggcatggagactatggattga |
5804517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 5851024 - 5851112
Alignment:
| Q |
220 |
tgagctttctcttgttgtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatat |
308 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||| |||||| |||||| |
|
|
| T |
5851024 |
tgagcttattcttgatgtaaattttatgtcatttcaggcatggagactatggatcgaagaaaggccactagagttcatagctaacatat |
5851112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 5444422 - 5444340
Alignment:
| Q |
236 |
gtaactttgatgtcattttaggcatggagactatggattgaaggaaggacactggagttaatagctgacatatcgtatgatga |
318 |
Q |
| |
|
||||| |||||||||||||||||||||| | | ||||||||||| ||| || ||||||||| |||||||||| |||||||| |
|
|
| T |
5444422 |
gtaaccttgatgtcattttaggcatggaaattgtggattgaaggcaggccagaggagttaatggctgacatattatatgatga |
5444340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University