View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15385_low_1 (Length: 593)

Name: NF15385_low_1
Description: NF15385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15385_low_1
NF15385_low_1
[»] chr8 (5 HSPs)
chr8 (82-471)||(44286912-44287300)
chr8 (330-554)||(6797297-6797522)
chr8 (358-524)||(9519947-9520114)
chr8 (467-559)||(44292589-44292683)
chr8 (322-510)||(42599269-42599458)
[»] chr1 (2 HSPs)
chr1 (322-543)||(8838397-8838619)
chr1 (405-559)||(42966599-42966754)
[»] chr2 (2 HSPs)
chr2 (322-525)||(6378509-6378709)
chr2 (325-512)||(6328239-6328427)
[»] chr3 (3 HSPs)
chr3 (325-391)||(47403361-47403427)
chr3 (326-380)||(53963263-53963317)
chr3 (322-414)||(38281039-38281131)
[»] chr7 (1 HSPs)
chr7 (322-421)||(10413289-10413388)
[»] chr6 (1 HSPs)
chr6 (325-402)||(7227597-7227674)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 82 - 471
Target Start/End: Original strand, 44286912 - 44287300
Alignment:
Q  82 agagagaaagagataaagacgacgaaggtgtgaatgattgtaataatgaagtgtggttaagtccaaacttttcctgtttactgtttttatatgacacgta 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44286912 agagagaaagagataaagacgaagaaggtgtgaatgattgtaataatgaagtgtggttaagtccaaacttttcctgtttactgtttttatattacacgta 44287011  T
Q  182 ctatgagagagaacacagtgttactgtagaccttaccaaatcggtgaagctaactaatttaataactatatta-nnnnnnnagcaaatttgtgagcaact 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||        ||||||||||||||||       
T  44287012 ctatgagagagaacacagtgttactgtagaccttaccaaatcggtgaggcaaactaatttaataactacactattttttttagcaaatttgtgagca--- 44287108  T
Q  281 actataatctatgttgccttataatttcaaaattctcatcatagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgact 380  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||  ||| || ||||||||||||||| ||||||||| |||| ||     
T  44287109 actataatctatcttgccttataatttcaaaattctctccatagattttataagtatggtacttttattcaagacatcaagaatcttctcactcttcacc 44287208  T
Q  381 gacaagcttctattgattacactcttcaagaaggtaatagttgtacagattttctagttaagattggt-cgtcttctacttcagagtgtgtt 471  Q
    ||||| |||||||| || | ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  44287209 gacaaacttctattaatcatactcttcaaaaaggtaatagttgtgcagattttctagttaagattggtgcgtcttctacttcagagtgtgtt 44287300  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 330 - 554
Target Start/End: Complemental strand, 6797522 - 6797297
Alignment:
Q  330 ataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagttgtacaga 429  Q
    ||||||||  |||||| |||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||||||||| | |||| || |  ||| ||||    
T  6797522 ataagtatgctacgttgattcaaaacatcaaggatctcctcaatcttaactggcaagcttctattgatcacactcttcgaaaaggaaacaaatgtgcaga 6797423  T
Q  430 ttttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattagatctcttagtttcagactctgcgcga 528  Q
    ||| |||| ||||| |||| | |||||||||||||||| |||| ||||||||||  ||| | |||||||||  |||||||||| |||||||| | |  ||    
T  6797422 tttcctagctaagactggtgcttcttctacttcagagtatgttgttcacacctctgctccaccaggattatctgatctcttagattcagactatacagga 6797323  T
Q  529 acctatttccgtagattttagtcttt 554  Q
    ||||  ||||||||| ||| ||||||    
T  6797322 acctggttccgtagactttggtcttt 6797297  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 358 - 524
Target Start/End: Original strand, 9519947 - 9520114
Alignment:
Q  358 caaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagttgtacagattttctagttaagattggtcgt-cttct 456  Q
    ||||||||| |||||||||||||  | | | || |||||| ||||| |||||||||| || |  ||| ||||||| |||| ||||||||||  | |||||    
T  9519947 caaggatctcctcaatcttgactagctaacctccattgatcacacttttcaagaaggaaacaactgtgcagatttcctagctaagattggtgtttcttct 9520046  T
Q  457 acttcagagtgtgttcttcacacctcccctctaacaggattattagatctcttagtttcagactctgc 524  Q
    || | | ||| |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  9520047 accttatagtatgttgttcacacctcccctctgacatgattatcagatctcttagtttcagactctgc 9520114  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 44292589 - 44292683
Alignment:
Q  467 gtgttcttcacacctcccctctaacaggattattagatctcttagtttcagac--tctgcgcgaacctatttccgtagattttagtctttccttt 559  Q
    ||||||||||||||||  ||| ||||| ||||| |||||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||    
T  44292589 gtgttcttcacacctcttctccaacagaattatcagatctcttagtttcagactttctgcgggaacctgtttccgtagattttagtctttccttt 44292683  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 510
Target Start/End: Original strand, 42599269 - 42599458
Alignment:
Q  322 tagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagt 421  Q
    ||||||| ||||||||  || ||| |||||||| |||||||| || ||||||||||||||   ||||||  ||| |  |||||||| |||||| || | |    
T  42599269 tagatttaataagtatgctaggttgattcaagatatcaaggacctcctcaatcttgactggttagcttcctttgttcgcactcttctagaaggaaacaat 42599368  T
Q  422 tgtacagattttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattagatctctta 510  Q
    ||| || ||||||||  |||||| ||| | |||||||| || |||| |||| ||||||||||||||   ||| ||||||| |||||||||    
T  42599369 tgtgcatattttctaactaagatcggtgcttcttctacctcggagtatgttgttcacacctccccttcgacatgattatttgatctctta 42599458  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 322 - 543
Target Start/End: Original strand, 8838397 - 8838619
Alignment:
Q  322 tagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagt 421  Q
    ||||||| ||||||||  ||| || ||||||||||||||||| || ||||||||| | || | ||||||  ||||| ||||||||| |||||| || |      
T  8838397 tagattttataagtatgctacattgattcaagacatcaaggacctcctcaatcttcattggctagcttccgttgatcacactcttcgagaaggaaacaac 8838496  T
Q  422 tgtacagattttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattagatctcttagtttcagact 520  Q
    ||| ||||||| |||| ||||| |||| | |||||||| ||  ||| |||| |||||||||||||||   || ||||||  |||||||||| || |||||    
T  8838497 tgttcagatttcctagctaagactggtgcttcttctacctcgaagtatgttgttcacacctcccctccggcaagattatctgatctcttagctttagact 8838596  T
Q  521 ctgcgcgaacctatttccgtaga 543  Q
    ||||| |||| |  |||||||||    
T  8838597 ctgcgggaacttggttccgtaga 8838619  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 559
Target Start/End: Original strand, 42966599 - 42966754
Alignment:
Q  405 ttcaagaaggtaatagttgtacagattttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattaga 503  Q
    |||||||||| || |  ||| ||||||| |||| ||||| |||| | |||||||||||||| | |||| |||||| ||| ||||  ||||||||||  ||    
T  42966599 ttcaagaaggaaacaactgtgcagatttcctagctaagactggtgcttcttctacttcagattatgttgttcacatctctcctccgacaggattatctga 42966698  T
Q  504 tctcttagtttcagactctgcgcgaacctatttccgtagattttagtctttccttt 559  Q
    ||| |||| ||||||||||| | ||||||  || |||||| |||||||||| ||||    
T  42966699 tcttttagattcagactctgtgggaacctggtttcgtagactttagtcttttcttt 42966754  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 322 - 525
Target Start/End: Complemental strand, 6378709 - 6378509
Alignment:
Q  322 tagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagt 421  Q
    |||||||||| |||||| |||||| ||| ||||| | |||||| | |||||||||||| |   |||||| ||||||   ||||||| |||||| || |||    
T  6378709 tagatttcattagtatactacgttgatttaagactttaaggatttcctcaatcttgacgggttagcttccattgatcttactcttcgagaaggaaacagt 6378610  T
Q  422 tgtacagattttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattagatctcttagtttcagact 520  Q
    ||| |||||||||||||||||| |  |   ||||||||  |||||| |||| |||||||| || |||| ||||||||||    |||||||| ||||||||    
T  6378609 tgtgcagattttctagttaagactaatgtttcttctaccgcagagtatgttgttcacaccacctctctgacaggattat----tctcttagcttcagact 6378514  T
Q  521 ctgcg 525  Q
    |||||    
T  6378513 ctgcg 6378509  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 512
Target Start/End: Original strand, 6328239 - 6328427
Alignment:
Q  325 atttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagttgt 424  Q
    |||||| ||||||  |||||| ||||||||   ||||||||| || ||| ||||||||| |||||| |||||| |||||||| ||||||| | ||  |||    
T  6328239 atttcacaagtatgctacgttgattcaagatgccaaggatctcctaaattttgactgactagcttccattgatcacactcttaaagaaggaagtaactgt 6328338  T
Q  425 acagattttctagttaagattggt-cgtcttctacttcagagtgtgttcttcacacctcccctctaacaggattattagatctcttagt 512  Q
      |||||||||||||| ||||||| | |||||||| | ||| | |||| |||||||||| ||||  ||| || ||||  ||||||||||    
T  6328339 gtagattttctagttatgattggtgcttcttctaccttagattatgttgttcacacctctcctccgacaagaatatttaatctcttagt 6328427  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 47403361 - 47403427
Alignment:
Q  325 atttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttct 391  Q
    |||||||||||||  ||| || ||||||||||||||||| || |||||||||||||| | |||||||    
T  47403361 atttcataagtatgctactttgattcaagacatcaaggacctcctcaatcttgactggctagcttct 47403427  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 53963317 - 53963263
Alignment:
Q  326 tttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgact 380  Q
    |||||||||||| ||||||| ||||||||||| |||||||| |||||| ||||||    
T  53963317 tttcataagtatgttacgttgattcaagacattaaggatctcctcaatattgact 53963263  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 38281039 - 38281131
Alignment:
Q  322 tagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaagg 414  Q
    ||||| ||||||||||| ||| || ||||||||| ||||||||||  |||||||||||||   |||||| || | | ||||||||| ||||||    
T  38281039 tagatatcataagtatactacattaattcaagacttcaaggatctcatcaatcttgactggttagcttccatcggtcacactcttcgagaagg 38281131  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 421
Target Start/End: Original strand, 10413289 - 10413388
Alignment:
Q  322 tagatttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacactcttcaagaaggtaatagt 421  Q
    |||||| ||||||||| |||| || |||| ||| ||||| |||||||||||| |||||||||  ||||| |||| | |||| || || ||||| ||||||    
T  10413289 tagattacataagtatgttactttgattccagatatcaatgatcttctcaattttgactgacttgcttcaattgttcacaccctccatgaaggaaatagt 10413388  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 7227674 - 7227597
Alignment:
Q  325 atttcataagtatattacgttcattcaagacatcaaggatcttctcaatcttgactgacaagcttctattgattacac 402  Q
    ||||||| |||||  |||||| |||||||||||| | ||||| ||||| ||||| |||| |||||| |||||| ||||    
T  7227674 atttcatgagtatgctacgttgattcaagacatctatgatctcctcaaccttgattgactagcttccattgatcacac 7227597  T

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