View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15386_low_2 (Length: 595)
Name: NF15386_low_2
Description: NF15386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15386_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 48398225 - 48398525
Alignment:
| Q |
11 |
cagagagacgaagtagagtacaagcgagaaaggcgtgttgtatttcggaaagcctaacttgtctgttttcctacccattaggtatcatgtagaagaatgc |
110 |
Q |
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| T |
48398225 |
cagagagacgaagtagagtacaagcgagaaaggcgtgttgtatttcggaaagcctaacttgtctgttttcccacccattaggtatcatgtagaagaatgc |
48398324 |
T |
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| Q |
111 |
tgagtttcatttaagggcagtcgattgtgttcttcgagttattttaaggtttaannnnnnncctttgtaaggttcgatgttagccttttgcttttataat |
210 |
Q |
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| T |
48398325 |
tgagtttcatttaagggcagtcgattgggttcttcgagttattttaaggtttagtttttttcctttgtagggttcgatgttagctttttgcttttataat |
48398424 |
T |
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| Q |
211 |
atgcaagaactgtgtatatcaaccatgtactccaaaaccatggnnnnnnntctaatgtcaatcttattgtggggtaaagtcttaagttatatcagcttca |
310 |
Q |
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| T |
48398425 |
atgcaagaactgtgtatatcaaccatgtactccaaaaccatggaaaaaaatctaatgtcaatcttattgtggggtaaaatctgatgttatatcagcttca |
48398524 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
48398525 |
a |
48398525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 453 - 541
Target Start/End: Original strand, 48398667 - 48398755
Alignment:
| Q |
453 |
ctcattaattctctaagcgagaatttacaaaattaagttagtttttaatttagatatgtttcaatcaaatcaccacttgaagatattcc |
541 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398667 |
ctcattaattctctaagcgagaatttacaaaattaagttagtttttaatttagatatgtttcaatcaaatcaccacttgaagatattcc |
48398755 |
T |
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