View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15386_low_5 (Length: 279)

Name: NF15386_low_5
Description: NF15386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15386_low_5
NF15386_low_5
[»] chr5 (2 HSPs)
chr5 (17-279)||(28607784-28608046)
chr5 (149-274)||(7589668-7589792)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-279)||(438861-439119)
[»] chr3 (3 HSPs)
chr3 (145-279)||(13659159-13659293)
chr3 (151-279)||(13651673-13651801)
chr3 (21-89)||(13659349-13659417)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 28608046 - 28607784
Alignment:
Q  17 tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608046 tggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgag 28607947  T
Q  117 tttcaatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaa 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28607946 tttcaatccactgccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaa 28607847  T
Q  217 atcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28607846 atcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatcagttatgtatgag 28607784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 7589668 - 7589792
Alignment:
Q  149 ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc 248  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||||||||||| ||||  || ||||||||||||| ||| |   | |||||||||| ||     
T  7589668 ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt 7589766  T
Q  249 atgtgtaccaagaatatctgttatgt 274  Q
    | |||| || ||||||| ||||||||    
T  7589767 aggtgtgccgagaatatatgttatgt 7589792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 438861 - 439119
Alignment:
Q  21 aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttc 120  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||  ||| |||| ||| |||||| ||     | |||||||||     
T  438861 aaacaaagtgcttaaaatctttggaacacacaacaagagtataatgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagtttt 438960  T
Q  121 aatccacttccaataaagtaaattggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatca 220  Q
     ||||| | |||  |||||| || ||||| ||||| |||  |||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  438961 gatccattgccacaaaagtagatcggtgcaagaaagccaataccaaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatca 439060  T
Q  221 acccgtatacaaatgcaccaacaacgtcatgtgtaccaagaatatctgttatgtatgag 279  Q
    ||||||||| ||| || |||||||| |||||||| |||||| |||| | |||| |||||    
T  439061 acccgtataaaaaagccccaacaacatcatgtgtgccaagagtatcggctatgaatgag 439119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 13659293 - 13659159
Alignment:
Q  145 ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa 244  Q
    |||||||||||||| || | |||||||| ||||| ||  ||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||||    
T  13659293 ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa 13659194  T
Q  245 cgtcatgtgtaccaagaatatctgttatgtatgag 279  Q
     ||| ||||| |||||||||||||||||| |||||    
T  13659193 tgtcttgtgttccaagaatatctgttatgcatgag 13659159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 13651801 - 13651673
Alignment:
Q  151 agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat 250  Q
    |||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || ||||  || |    
T  13651801 agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt 13651702  T
Q  251 gtgtaccaagaatatctgttatgtatgag 279  Q
    |||| ||||||||| ||||||| ||||||    
T  13651701 gtgtgccaagaatacctgttatatatgag 13651673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 13659417 - 13659349
Alignment:
Q  21 aaacaaagtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggccaacttgg 89  Q
    |||||||||||||| ||||||  ||||||| | ||||| |||||| | |||||| ||||||||| ||||    
T  13659417 aaacaaagtgcttaaaatcttcggaacacataacaagattataataacaagtgttaagggccaagttgg 13659349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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