View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15386_low_7 (Length: 256)
Name: NF15386_low_7
Description: NF15386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15386_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 12263932 - 12264182
Alignment:
| Q |
1 |
gtccatttcaatatgcctatgatattgacatgtttagactcataggtagtgaactaatccggattgtctaaaattttctcatactaaactacttaataat |
100 |
Q |
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| T |
12263932 |
gtccatttcaatatgcctatgatattgacatgtttagactcataggtagtgaactaatccggattgtctaaaattttctcatactaaactacttaataat |
12264031 |
T |
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| Q |
101 |
ttcttctttttatttac--nnnnnnnnnacctatacttcatcaaacaaataatgtgtaaaaaaggtacgaactaatttattctgatttgnnnnnnnncaa |
198 |
Q |
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| T |
12264032 |
ttcttctttttatttactttttttttttacctatacttcatcaaacaaataatgtgtaaaaaaggtacgaactaatttattctgatttgttttttttcaa |
12264131 |
T |
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| Q |
199 |
tgacttaaaagaatgcttttattcctcttaaacaatgcttttattcttctc |
249 |
Q |
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| T |
12264132 |
tgacttaaaagaatgcttttattcctcttaaacaatgcttttatttttctc |
12264182 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27233259 - 27233294
Alignment:
| Q |
1 |
gtccatttcaatatgcctatgatattgacatgttta |
36 |
Q |
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| T |
27233259 |
gtccatttcaatatgcctatgatattgacatgttta |
27233294 |
T |
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