View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15387_high_1 (Length: 351)
Name: NF15387_high_1
Description: NF15387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15387_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 1129669 - 1129950
Alignment:
| Q |
15 |
aagaaaagtgggggaaatttttattannnnnnngaaaattgatctgatacttacattgaatctggaggaattgattaattattaattagttaaacttgtg |
114 |
Q |
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| T |
1129669 |
aagaaaagtgggggaagtttttattatttttttgaaaattgatctgatacctacattgaatctggaggaattgattaattattaattagttaaacttgtg |
1129768 |
T |
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| Q |
115 |
acttgattagttgttgcggttaaccagttttctata-tctatataacttatgttactattggaacgaacagatggtacatacaactttttccatgcagca |
213 |
Q |
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| T |
1129769 |
acttgattagttgttgcggttaaccagttttctatagtctatataacttatgttactattggaaggaacagatggtacatacaactttttccatgcagca |
1129868 |
T |
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| Q |
214 |
taaaataaa---------------aacaggaactcgtagttcttcaaccatatattctatgaatttctatgaatatacaaga |
280 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1129869 |
taaaataaaaacaatgtgaggtgtaacaggaactcgtagttcttcaaccatatattctatgaatttctatgaatatacaaga |
1129950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 1129974 - 1130002
Alignment:
| Q |
309 |
cacaagacattttagcaatgagttaaagt |
337 |
Q |
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| T |
1129974 |
cacaagacattttagcaatgagttaaagt |
1130002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 22972932 - 22972667
Alignment:
| Q |
15 |
aagaaaagtgggggaaatttttattannnnnnngaaaattgatctgatacttacattgaatctggaggaattgattaattattaattagttaaacttgtg |
114 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
22972932 |
aagaaaagtgggggaaatttttattatttttttgaaaattgatctgatacctacattgaatctggaggaattgattaatt----------------tgtg |
22972849 |
T |
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| Q |
115 |
acttgattagttgttgcggttaaccagttttctata-tctatataacttatgttactattggaacgaacagatggtacatacaactttttccatgcagca |
213 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22972848 |
acttgattagttgttgcggttaaccagttttgtatagtctatataacttatgttactattggaaggaacagatggtacatacaactttttccatgcagca |
22972749 |
T |
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| Q |
214 |
taaaataaa---------------aacaggaactcgtagttcttcaaccatatattctatgaatttctatgaatatacaaga |
280 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22972748 |
taaaataaaaacaatgtgaggtgtaacaggaactcgtagttcttcaaccatatattctatgaatttctatgaatatacaaga |
22972667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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