View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15387_low_2 (Length: 322)

Name: NF15387_low_2
Description: NF15387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15387_low_2
NF15387_low_2
[»] chr4 (7 HSPs)
chr4 (18-309)||(3186643-3186932)
chr4 (93-205)||(37466400-37466516)
chr4 (91-205)||(14799521-14799639)
chr4 (22-83)||(20697855-20697912)
chr4 (224-256)||(9816468-9816500)
chr4 (224-256)||(23217291-23217323)
chr4 (224-256)||(37465855-37465887)
[»] chr7 (8 HSPs)
chr7 (70-205)||(18887018-18887155)
chr7 (91-201)||(31419586-31419700)
chr7 (91-205)||(8362489-8362607)
chr7 (224-257)||(44660881-44660914)
chr7 (217-259)||(31422167-31422209)
chr7 (224-256)||(8363960-8363992)
chr7 (227-259)||(17977627-17977659)
chr7 (224-256)||(18887363-18887395)
[»] chr5 (7 HSPs)
chr5 (91-201)||(22272705-22272819)
chr5 (94-171)||(18739178-18739259)
chr5 (224-256)||(22270200-22270232)
chr5 (224-256)||(41958107-41958139)
chr5 (224-256)||(43300746-43300778)
chr5 (224-257)||(38394980-38395013)
chr5 (224-256)||(3175259-3175291)
[»] chr6 (4 HSPs)
chr6 (91-201)||(7171471-7171585)
chr6 (224-256)||(7171746-7171778)
chr6 (152-205)||(14200771-14200824)
chr6 (224-256)||(6807404-6807436)
[»] chr3 (6 HSPs)
chr3 (91-201)||(2734217-2734331)
chr3 (91-201)||(40923263-40923377)
chr3 (224-256)||(2736804-2736836)
chr3 (224-256)||(22126360-22126392)
chr3 (224-256)||(40925851-40925883)
chr3 (224-256)||(2337887-2337919)
[»] scaffold0005 (1 HSPs)
scaffold0005 (91-205)||(40088-40206)
[»] chr8 (7 HSPs)
chr8 (91-205)||(33361226-33361344)
chr8 (224-259)||(1669121-1669156)
chr8 (224-257)||(38520296-38520329)
chr8 (224-256)||(16659915-16659947)
chr8 (224-260)||(22015929-22015965)
chr8 (224-256)||(33363896-33363928)
chr8 (224-256)||(42809834-42809866)
[»] chr1 (3 HSPs)
chr1 (18-60)||(52800805-52800847)
chr1 (224-256)||(3288021-3288053)
chr1 (149-205)||(25534915-25534971)
[»] chr2 (4 HSPs)
chr2 (149-205)||(5086379-5086435)
chr2 (149-205)||(43327662-43327718)
chr2 (224-256)||(3934365-3934397)
chr2 (224-256)||(38974743-38974775)
[»] scaffold0393 (1 HSPs)
scaffold0393 (224-257)||(10625-10658)
[»] scaffold0024 (1 HSPs)
scaffold0024 (224-256)||(11736-11768)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 3186932 - 3186643
Alignment:
Q  18 tgttgttggtttgattcttgcaattaacaggtgagcatactatatattggagcacacagttggaaaagttga--tagatgaagattcaaagaatcgatta 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||    |||||| |||| ||||||||||| |  |||||||||||||||||||||||||     
T  3186932 tgttgttggtttgattcttgcaattaagaggtgagcatactat----tggagcgcacaattggaaaagttaaggtagatgaagattcaaagaatcgattc 3186837  T
Q  116 tattttcaagaggccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattcatgagaatccaagaattgaaagggaaatta 215  Q
    |||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3186836 tatttttaagaggccgttgatattcaaagagatgaagttataatttcttcatccgaacctgaacaagttcatgagaatccaagaattgaaagggaaatta 3186737  T
Q  216 gtgatgggcaccccaaacatttttgtctggctccgccactgtttctaggtaaaatcaatgactaaatcatattacatagactaaaagaataata 309  Q
    |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3186736 gtgacggccaccccaaacatttttgtctggctccgccactgtttctatgtaaaatcaatgactaaatcatattacatagactaaaagaataata 3186643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 37466516 - 37466400
Alignment:
Q  93 atgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattcatg 188  Q
    |||||| ||||||||||||||| |||||||||||||    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  37466516 atgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaagagatgaagttataatttcttcatccgaacctgaacaagttcatg 37466417  T
Q  189 agaatccaagaattgaa 205  Q
    |||||||||||||||||    
T  37466416 agaatccaagaattgaa 37466400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 14799639 - 14799521
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||  ||||||||| ||||||||||||  |||    
T  14799639 agatgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaaaagatgaagttatagtttcttcatctgaacctgaacaagctca 14799540  T
Q  187 tgagaatccaagaattgaa 205  Q
    |||||||||||||||||||    
T  14799539 tgagaatccaagaattgaa 14799521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 20697912 - 20697855
Alignment:
Q  22 gttggtttgattcttgcaattaacaggtgagcatactatatattggagcacacagttggaaa 83  Q
    ||||||||||||||||||||||||||||| |||| |    ||||||||||||||||||||||    
T  20697912 gttggtttgattcttgcaattaacaggtgggcatcc----tattggagcacacagttggaaa 20697855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 9816468 - 9816500
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  9816468 caccccaaacttttttgtctggctccgccactg 9816500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 23217323 - 23217291
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  23217323 caccccaaacttttttgtctggctccgccactg 23217291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 37465887 - 37465855
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||| ||||||||||||||||||    
T  37465887 caccccaaacatttatgtctggctccgccactg 37465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 18887018 - 18887155
Alignment:
Q  70 cacacagttggaaaagttgatagatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttc 165  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||| ||||||    
T  18887018 cacacagttggaaaagttaa--gatgaagattcaaagaatcgattatattttcaagaggaaggccgttgatattcaaagagatgaagttataatttcttc 18887115  T
Q  166 atccgaacctgaacaaattcatgagaatccaagaattgaa 205  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  18887116 atccgaacctgaacaagttcatgagaattcaagaattgaa 18887155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 31419586 - 31419700
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    || |||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||    
T  31419586 agatgaagtttcaaagaatcgattctattttcaagaggaaggcctttgatattcaaaaagatgaagttataatttcttcatccgaacctgaacaagttca 31419685  T
Q  187 tgagaatccaagaat 201  Q
    |||||||||||||||    
T  31419686 tgagaatccaagaat 31419700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 8362489 - 8362607
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    ||||||||  ||||||||||| || |||||||||||||    || |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  8362489 agatgaagtatcaaagaatcgtttctattttcaagaggaaggccattgatattcaaagagatgaagttataatttcttcatccgaacctgaacaagttca 8362588  T
Q  187 tgagaatccaagaattgaa 205  Q
    ||||||||||| |||||||    
T  8362589 tgagaatccaataattgaa 8362607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 44660881 - 44660914
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgt 257  Q
    ||||||||||||||||||||||||||||||||||    
T  44660881 caccccaaacatttttgtctggctccgccactgt 44660914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 31422167 - 31422209
Alignment:
Q  217 tgatgggcaccccaaacatttttgtctggctccgccactgttt 259  Q
    |||||| || |||||||||||||||||||||| ||||||||||    
T  31422167 tgatggccatcccaaacatttttgtctggctctgccactgttt 31422209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 8363960 - 8363992
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  8363960 caccccaaacttttttgtctggctccgccactg 8363992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 17977659 - 17977627
Alignment:
Q  227 cccaaacatttttgtctggctccgccactgttt 259  Q
    ||||||||||||||| |||||||||||||||||    
T  17977659 cccaaacatttttgtgtggctccgccactgttt 17977627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 18887363 - 18887395
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    ||||||||| |||||||||||||||||||||||    
T  18887363 caccccaaatatttttgtctggctccgccactg 18887395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 22272819 - 22272705
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| |||||||||||||||||||||||||||||    ||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||    
T  22272819 agatgaagtttcaaagaatcgattatattttcaagaggaaggccgttgatattcaaaaagatgaagttataatttcttcatccgaacctgaacaagttca 22272720  T
Q  187 tgagaatccaagaat 201  Q
    |||||||||||||||    
T  22272719 tgagaatccaagaat 22272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 18739259 - 18739178
Alignment:
Q  94 tgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccga 171  Q
    |||||||||||||||| |||| ||||||||| |||    | ||||||||| |||||||||||||| ||| ||||||||||||    
T  18739259 tgaagattcaaagaatagattctattttcaaaaggaaggctgttgatattgaaagagatgaagttgtaatttcttcatccga 18739178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 22270232 - 22270200
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  22270232 caccccaaacatttttgtctggctccgccactg 22270200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 41958139 - 41958107
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  41958139 caccccaaacatttttgtctggctccgccactg 41958107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 43300746 - 43300778
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  43300746 caccccaaacatttttgtctggctccgccactg 43300778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 38395013 - 38394980
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgt 257  Q
    |||||||||| |||||||||||||||||||||||    
T  38395013 caccccaaacctttttgtctggctccgccactgt 38394980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 3175259 - 3175291
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  3175259 caccccaaacttttttgtctggctccgccactg 3175291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 7171471 - 7171585
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||    
T  7171471 agatgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaaaagatgaagttataatttcttcatccgaacctgaacaagttca 7171570  T
Q  187 tgagaatccaagaat 201  Q
    |||||||||||||||    
T  7171571 tgagaatccaagaat 7171585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 7171746 - 7171778
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  7171746 caccccaaacatttttgtctggctccgccactg 7171778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 14200824 - 14200771
Alignment:
Q  152 gttataacttcttcatccgaacctgaacaaattcatgagaatccaagaattgaa 205  Q
    ||||||| ||||||||| ||||| |||||| ||  |||||||||||||||||||    
T  14200824 gttataatttcttcatctgaacccgaacaagtttgtgagaatccaagaattgaa 14200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 6807404 - 6807436
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  6807404 caccccaaacttttttgtctggctccgccactg 6807436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 2734217 - 2734331
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||    
T  2734217 agatgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaaaagatgaagttataatttcttcatccgaacctgaacaagttca 2734316  T
Q  187 tgagaatccaagaat 201  Q
    |||||||||||||||    
T  2734317 tgagaatccaagaat 2734331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 40923263 - 40923377
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||| ||||||||||||||||||| || ||||    
T  40923263 agatgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaaaagatgaagttataatttcttcatccgaacctgaataagttca 40923362  T
Q  187 tgagaatccaagaat 201  Q
    |||||||||||||||    
T  40923363 tgagaatccaagaat 40923377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 2736804 - 2736836
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  2736804 caccccaaacatttttgtctggctccgccactg 2736836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 22126392 - 22126360
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  22126392 caccccaaacatttttgtctggctccgccactg 22126360  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 40925851 - 40925883
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||||||||||    
T  40925851 caccccaaacatttttgtctggctccgccactg 40925883  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 2337919 - 2337887
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  2337919 caccccaaacttttttgtctggctccgccactg 2337887  T

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Target: scaffold0005 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 40088 - 40206
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagagg----ccgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| ||||||||||||||| |||||||||||||    ||||||||||| ||| |||||||||||||  ||||||||| ||||||||||||  |||    
T  40088 agatgaagtttcaaagaatcgattctattttcaagaggaaggccgttgatattcaaaaagatgaagttatagtttcttcatctgaacctgaacaagctca 40187  T
Q  187 tgagaatccaagaattgaa 205  Q
    |||||||||||||||||||    
T  40188 tgagaatccaagaattgaa 40206  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 33361226 - 33361344
Alignment:
Q  91 agatgaagattcaaagaatcgattatattttcaagaggc----cgttgatatttaaagagatgaagttataacttcttcatccgaacctgaacaaattca 186  Q
    |||||||| |||||||||| |||| |||||||||||||     |||||||||| |||||||||||||||||| |||||||||||||| ||||||  ||||    
T  33361226 agatgaagtttcaaagaattgattctattttcaagaggaaggtcgttgatattcaaagagatgaagttataatttcttcatccgaacttgaacatgttca 33361325  T
Q  187 tgagaatccaagaattgaa 205  Q
    |||||||||||||||||||    
T  33361326 tgagaatccaagaattgaa 33361344  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 1669121 - 1669156
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgttt 259  Q
    |||||||||| |||||||||||||||||||||||||    
T  1669121 caccccaaacttttttgtctggctccgccactgttt 1669156  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 38520329 - 38520296
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgt 257  Q
    |||||||||| |||||||||||||||||||||||    
T  38520329 caccccaaacttttttgtctggctccgccactgt 38520296  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 16659915 - 16659947
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  16659915 caccccaaacttttttgtctggctccgccactg 16659947  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 22015929 - 22015965
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgtttc 260  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  22015929 caccccaaacttttttgtctggctccgctactgtttc 22015965  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 33363896 - 33363928
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||||||||| ||||||    
T  33363896 caccccaaacatttttgtctggctccaccactg 33363928  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 42809834 - 42809866
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||||||||||||| ||||||||||||    
T  42809834 caccccaaacatttttgtctagctccgccactg 42809866  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 52800847 - 52800805
Alignment:
Q  18 tgttgttggtttgattcttgcaattaacaggtgagcatactat 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52800847 tgttgttggtttgattcttgcaattaacaggtgagcatactat 52800805  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 3288053 - 3288021
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  3288053 caccccaaacttttttgtctggctccgccactg 3288021  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 25534915 - 25534971
Alignment:
Q  149 gaagttataacttcttcatccgaacctgaacaaattcatgagaatccaagaattgaa 205  Q
    |||||||||| |||| ||||| ||| |||||| |||  |||||||||||||||||||    
T  25534915 gaagttataatttctgcatccaaacttgaacatatttgtgagaatccaagaattgaa 25534971  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 5086379 - 5086435
Alignment:
Q  149 gaagttataacttcttcatccgaacctgaacaaattcatgagaatccaagaattgaa 205  Q
    |||||||||| ||||||||| |||| ||||||| ||  |||||||||||||||||||    
T  5086379 gaagttataatttcttcatctgaacttgaacaagtttgtgagaatccaagaattgaa 5086435  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 43327662 - 43327718
Alignment:
Q  149 gaagttataacttcttcatccgaacctgaacaaattcatgagaatccaagaattgaa 205  Q
    |||||||||| ||||||||| |||| ||||||| ||  |||||||||||||||||||    
T  43327662 gaagttataatttcttcatctgaacttgaacaagtttgtgagaatccaagaattgaa 43327718  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 3934397 - 3934365
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  3934397 caccccaaacttttttgtctggctccgccactg 3934365  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 38974775 - 38974743
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  38974775 caccccaaacttttttgtctggctccgccactg 38974743  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 10658 - 10625
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactgt 257  Q
    |||||||||| |||||||||||||||||||||||    
T  10658 caccccaaacttttttgtctggctccgccactgt 10625  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 11768 - 11736
Alignment:
Q  224 caccccaaacatttttgtctggctccgccactg 256  Q
    |||||||||| ||||||||||||||||||||||    
T  11768 caccccaaacctttttgtctggctccgccactg 11736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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