View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15387_low_3 (Length: 286)
Name: NF15387_low_3
Description: NF15387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15387_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 27813271 - 27813172
Alignment:
| Q |
65 |
gtttcatgcacatctattaattttgttatatctgttgcaataaatgtttggtgcttcttagtgtgattaagtctttacttgttttaagggttagctgatt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27813271 |
gtttcatgcacatctattaattttgttatatctgttgcaataaatgtttggtgcttcttagtgtgattaagtctttacttgttttaagggttagctgatt |
27813172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 3248269 - 3248107
Alignment:
| Q |
4 |
acatacgaaaggaatccgagaattgcaaaaggttt--------tctgacatcgaacaccctttttgtgtgtttcatgcacatctattaattttgttatat |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || |||| ||||||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3248269 |
acatacgaaaggaatccgagaattgcaaaaggtttgtcgtcaatttgtcatcaaacacccttgttgtgtgtttcatggacatcaattaattttgttatat |
3248170 |
T |
|
| Q |
96 |
ctgttgcaataaa-tgtttggtgcttcttagtgtgattaagtctttacttgttttaagggtta |
157 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
3248169 |
ctgttgcaataaattatttagtgcttcttagtttgattacgtctttacttgttttaagtgtta |
3248107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University