View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15388_high_3 (Length: 424)
Name: NF15388_high_3
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15388_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 6593064 - 6593448
Alignment:
| Q |
13 |
ataatactatttagttgattagaggataaacaattcctcttcaataagacgttgttggcgagaggagtatgaatctactctcgagttggcataacgcaca |
112 |
Q |
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| T |
6593064 |
ataatactatttagttgattagaggataaacaattcctcttcaataagacgttgtcggcgagaggagtatgaatctactctcgagttggcataacacaaa |
6593163 |
T |
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| Q |
113 |
gacatgctgaaataatgcagcggcacagcaacatgttgtcaatcacatatggaagaaaccgagctacaagtgtaatgtcgatgcagttttctctaggtca |
212 |
Q |
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| T |
6593164 |
gacatgctgaaataatgcagtggcacagcaacaagttgtcaatcacatatggaagaaaccgagctacaagtgtaatgtcgatgcagttttctctaggtca |
6593263 |
T |
|
| Q |
213 |
agtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagcaaacggaatggatttcacccatcctaaaagttgatgaagga |
312 |
Q |
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| T |
6593264 |
agtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagcaaacggaatgaatttcacccatcctaaaagttgatgaagga |
6593363 |
T |
|
| Q |
313 |
gaggctt------tactgttcgctatcagatggttgaaggatttgcatattaataatgtgacttttaagttggactcttcgagag |
391 |
Q |
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| T |
6593364 |
gaggctttaggtctactgttcgctatcagatggttgaaggatttgcatattaataatgcgacttttaagttggactctacgagag |
6593448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 173 - 382
Target Start/End: Original strand, 6904237 - 6904458
Alignment:
| Q |
173 |
gagctacaagtgtaatgtcgatgcagttttctctaggtcaagtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagca |
272 |
Q |
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| T |
6904237 |
gagctataagggtaacatcgatgcagctttctccaggtcaagtagtagagtggggattgaaatgtgtattagaggcgtttaaggaagttttgttttagca |
6904336 |
T |
|
| Q |
273 |
aa--cggaatggatttcacccatcctaaaagttgatgaaggagaggcttta----------ctgttcgctatcagatggttgaaggatttgcatattaat |
360 |
Q |
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|| | |||| |||| |||||||||||||||||||| |||||| |||| |||| | ||||||||||||||||||||||||||||| | |
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| T |
6904337 |
aaagcataatgaattttgtccatcctaaaagttgatgaatgagaggatttaggcctactgtttgtttgttatcagatggttgaaggatttgcatattagt |
6904436 |
T |
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| Q |
361 |
aatgtgacttttaagttggact |
382 |
Q |
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||||||| |||| |||| |||| |
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| T |
6904437 |
aatgtgatttttgagttagact |
6904458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 5444496 - 5444354
Alignment:
| Q |
84 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaacc-------- |
172 |
Q |
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| T |
5444496 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccgaatgcaa |
5444397 |
T |
|
| Q |
173 |
-gagctacaagtgtaatgtcgatgcagttttctctaggtcaag |
214 |
Q |
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| T |
5444396 |
ggagctacaagtgtaatgtcgatgcagctttctccatgtcaag |
5444354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 5453540 - 5453398
Alignment:
| Q |
84 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaacc-------- |
172 |
Q |
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||||||||||| |||||||||||||| || ||||| | |||||||| ||| ||| ||||| ||||||||||||| |||||||||||| |
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| T |
5453540 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccgaatgcaa |
5453441 |
T |
|
| Q |
173 |
-gagctacaagtgtaatgtcgatgcagttttctctaggtcaag |
214 |
Q |
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|||||||||||||||||||||||||| |||||| | |||||| |
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| T |
5453440 |
ggagctacaagtgtaatgtcgatgcagctttctccatgtcaag |
5453398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 6904165 - 6904214
Alignment:
| Q |
70 |
gcgagaggagtatgaatctactctcgagttggcataacgcacagacatgc |
119 |
Q |
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|||||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
6904165 |
gcgagaggggttagaatctactctcgagttggcataacgcgcagacatgc |
6904214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 15824665 - 15824570
Alignment:
| Q |
228 |
attggtatgtgtattagagacgatcatggaagttttgttttagcaaa--cggaatggatttcacccatcctaaaagttgatgaaggagaggcttta |
321 |
Q |
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|||||||| || || || |||||||| ||||| || ||||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
15824665 |
attggtatatgcatcagggacgatcaaggaagcttcgttttagcaaaaacaaaatggatttcacccatccttaaagttgatgaaggagaagcttta |
15824570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 6540440 - 6540481
Alignment:
| Q |
343 |
aaggatttgcatattaataatgtgacttttaagttggactct |
384 |
Q |
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|||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
6540440 |
aaggatttgcatattaataatgggacttttgagttagactct |
6540481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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