View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15388_low_1 (Length: 652)
Name: NF15388_low_1
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15388_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 39 - 294
Target Start/End: Complemental strand, 25361835 - 25361580
Alignment:
| Q |
39 |
caaataatcgactccatgcacgtagtactactaagaagacggaagaattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc |
138 |
Q |
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| T |
25361835 |
caaataatcgactccatgcacgcagtacttctaagaagacggaaggattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagc |
25361736 |
T |
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| Q |
139 |
tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactgcggatcctgtaccatctgatgtgagcctgtttgtcttcattttattt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25361735 |
tacaaacacatttgctgagccaatttctacgatgaaacttgtaccaacaactacggatcctgtaccatctgatgtgagcctgtttgtcttcattttattt |
25361636 |
T |
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| Q |
239 |
caattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
294 |
Q |
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| T |
25361635 |
caattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
25361580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 343 - 616
Target Start/End: Complemental strand, 25361531 - 25361248
Alignment:
| Q |
343 |
gtaaggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaatcgtgattaatgataatgatt |
442 |
Q |
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| T |
25361531 |
gtaaggactagtgatagattgagaaccttgaccttcaaaagatcatatgatggtcctgggagagatgcaagcagtccaatcgtgattaatgataatgatt |
25361432 |
T |
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| Q |
443 |
atgatgatgatgaagaagaagaa---------aaatcacatgatcccaaaattggaagttgcatgcaagccttgagaagttgcgacgaaatttccaaaag |
533 |
Q |
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| T |
25361431 |
acgatgatgatgcagaagaagaagaagacggcaaattatatgatcagaaaattggaagttgtatgcatgccttaagaagttgcgatgaaatttccaagag |
25361332 |
T |
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| Q |
534 |
tttgaccaaaatccattcgacatgctttgtttaggact-tgtatgatatgtattttgataccgtgctataaaaccaataactgc |
616 |
Q |
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| T |
25361331 |
tttgacaaaaaatcattcctcatgctttgtttaggactctttatgatatgtattttgatattatggtataaaagcaataactgc |
25361248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 346 - 614
Target Start/End: Complemental strand, 25349651 - 25349384
Alignment:
| Q |
346 |
aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaatcgtgattaatgataatgattatg |
445 |
Q |
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| T |
25349651 |
aggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtc-tgggagagatgcaactagtccaattgtgattaacgatgatgattatg |
25349553 |
T |
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| Q |
446 |
atgatgatgaagaagaagaaaaatcacatgatcccaaaattggaagttgcatgcaagccttgagaagttgcgacgaaatttccaaaagtttgaccaaaat |
545 |
Q |
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| T |
25349552 |
atgatgatgatgaagacgaagaattatatgatcccaaagttggaagttgcgtgcaaaccttaagaggttcggatggaatttccagaagtttgacaaaaat |
25349453 |
T |
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| Q |
546 |
ccattcgacatgctttgtttaggacttgtatgatatgtattttgataccgtgctataaaaccaataact |
614 |
Q |
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| T |
25349452 |
agattcatcatgctttcgttaggacttttatgatatgtattttgatttggtggtataaaaccaataact |
25349384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 346 - 580
Target Start/End: Complemental strand, 25352190 - 25351956
Alignment:
| Q |
346 |
aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaatcgtgattaatgataatgattatg |
445 |
Q |
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||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| | ||||| |||||||| ||| ||||||||| |
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| T |
25352190 |
aggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaacctgcccaattgtgattaacgatgatgattatg |
25352091 |
T |
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| Q |
446 |
atgatgatgaagaagaagaaaaatcacatgatcccaaaattggaagttgcatgcaagccttgagaagttgcgacgaaatttccaaaagtttgaccaaaat |
545 |
Q |
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||||||| || || || | | | | ||||||| ||| |||||||||||||||| ||||| |||||||| || | |||||||||||| |||| ||| | |
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| T |
25352090 |
atgatgacgacgacgacaatgagttaaatgatccgaaagttggaagttgcatgcatgccttaagaagttgggatggaatttccaaaagcttgaaaaaatt |
25351991 |
T |
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| Q |
546 |
ccattcgacatgctttgtttaggacttgtatgata |
580 |
Q |
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|||||| | ||||||| ||||||||| ||||||| |
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| T |
25351990 |
ccattcctcttgctttgattaggacttttatgata |
25351956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 25356859 - 25356750
Alignment:
| Q |
346 |
aggactagtgatagattgagaaccttgaccttcaaaagagtatatgatggtcctgggagagatgcaaccagtccaatcgtgattaatgataatgattatg |
445 |
Q |
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||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||| ||| |||| |||| |
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| T |
25356859 |
aggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgcagccagtccaattttgattaacgatgatgaatatg |
25356760 |
T |
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| Q |
446 |
atgatgatga |
455 |
Q |
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|||||||||| |
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| T |
25356759 |
atgatgatga |
25356750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 579
Target Start/End: Complemental strand, 25356711 - 25356604
Alignment:
| Q |
473 |
atgatcccaaaattggaagttgcatgcaagccttgagaagttgcgacgaaatttccaaaagtttgaccaaaa-tccattcgacatgctttgtttaggact |
571 |
Q |
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||||||| ||| |||||||||||||||| ||||| |||||||| || | |||||| ||||| |||| |||| ||||||| ||||||||| |||||||| |
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| T |
25356711 |
atgatccgaaagttggaagttgcatgcatgccttaagaagttgggatggaatttcgaaaagcttgaaaaaaattccattcctcatgctttgattaggact |
25356612 |
T |
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| Q |
572 |
tgtatgat |
579 |
Q |
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| T |
25356611 |
tttatgat |
25356604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 25356986 - 25356914
Alignment:
| Q |
225 |
tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgtag |
294 |
Q |
| |
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|||||||||||||||||||| || |||||| |||||| |||||||||||||| |||| |||||| |||||| |
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| T |
25356986 |
tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 25349781 - 25349711
Alignment:
| Q |
225 |
tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgt |
292 |
Q |
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|||||||||||||||||||| || |||||| |||||| |||||||||||||| || | ||||||||||| |
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| T |
25349781 |
tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 25352346 - 25352285
Alignment:
| Q |
197 |
cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaata |
258 |
Q |
| |
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|||||||||||| ||||||| || | |||||||||||||||||||| |||||||| |||| |
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| T |
25352346 |
cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaata |
25352285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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