View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15388_low_11 (Length: 233)

Name: NF15388_low_11
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15388_low_11
NF15388_low_11
[»] chr6 (1 HSPs)
chr6 (1-220)||(33303574-33303799)
[»] chr3 (3 HSPs)
chr3 (112-162)||(41319340-41319390)
chr3 (112-152)||(11093559-11093599)
chr3 (112-152)||(46191375-46191415)
[»] chr1 (1 HSPs)
chr1 (112-162)||(32340670-32340720)
[»] chr8 (2 HSPs)
chr8 (112-155)||(34201076-34201119)
chr8 (115-149)||(41141664-41141698)
[»] chr5 (1 HSPs)
chr5 (112-143)||(4344869-4344900)
[»] chr4 (1 HSPs)
chr4 (112-170)||(31243578-31243636)
[»] chr7 (1 HSPs)
chr7 (112-149)||(927867-927904)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33303799 - 33303574
Alignment:
Q  1 acaacagatagatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatctgcaatgaagagcattgacatgatgttcatctctgnnnnnnnnnn 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |              
T  33303799 acaacagatggatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatctgcaatgaagagcattgacattatgttcatctccgttttttgttt 33303700  T
Q  101 nnnnngaagtaatgtcattttttcaaattattattagtgtcgat------gtgtccgtatcgtgtctggcgtccgtatgggtgcttgataaaataaaaac 194  Q
         |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33303699 tttttgaagtaatgtcattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggtgtccgtatgggtgcttgataaaataaaaac 33303600  T
Q  195 attttaaggaacactttatcagtgaa 220  Q
    ||||||||||||||||||||||||||    
T  33303599 attttaaggaacactttatcagtgaa 33303574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 41319340 - 41319390
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgtatcgtgtctg 162  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  41319340 atgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtctg 41319390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 11093599 - 11093559
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgt 152  Q
    ||||||||||||||||||||||| |||||  ||||||||||    
T  11093599 atgtcattttttcaaattattatcagtgtaaatgtgtccgt 11093559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 46191375 - 46191415
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgt 152  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  46191375 atgtgattttctcaaattattattggtgtcgatgtgtccgt 46191415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 32340670 - 32340720
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgtatcgtgtctg 162  Q
    ||||||||||||||||||||||||||| |||  ||| ||||||||||||||    
T  32340670 atgtcattttttcaaattattattagtatcggcgtgaccgtatcgtgtctg 32340720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 34201076 - 34201119
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgtatc 155  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||    
T  34201076 atgtcattttctcaaattattattagtgtcaatgtgtcggtatc 34201119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 41141664 - 41141698
Alignment:
Q  115 tcattttttcaaattattattagtgtcgatgtgtc 149  Q
    ||||||||||||||||||||| |||||||||||||    
T  41141664 tcattttttcaaattattattggtgtcgatgtgtc 41141698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 4344900 - 4344869
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcga 143  Q
    ||||||||||||||||||||||||||||||||    
T  4344900 atgtcattttttcaaattattattagtgtcga 4344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 31243578 - 31243636
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtccgtatcgtgtctggcgtccgt 170  Q
    |||||||||| |||||||||||| |||||||||||| | || |||||||| | ||||||    
T  31243578 atgtcattttctcaaattattataagtgtcgatgtgcctgtgtcgtgtcttgtgtccgt 31243636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 927867 - 927904
Alignment:
Q  112 atgtcattttttcaaattattattagtgtcgatgtgtc 149  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  927867 atgtcattttctcaaattattattagtgtcgacgtgtc 927904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University