View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15388_low_2 (Length: 463)
Name: NF15388_low_2
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15388_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 456
Target Start/End: Complemental strand, 56316015 - 56315580
Alignment:
| Q |
21 |
gtcgatttagaggaaggcgtcacaaatgcagggttctacctacaccaccgctatatcaagcctccaaaacctttttctattggaaatcaacatgcgtcac |
120 |
Q |
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| T |
56316015 |
gtcgttttagaggaaggcgtcacaaatgcagggttctacctacaccaccgctatatcaagcctccaaaacctttttctattggaaatcaacatgcgtcac |
56315916 |
T |
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| Q |
121 |
taaccgccaccaccatttagctaagagggatttattaaattaaagagatttaaatccttaacccctgaaccgccacaatcctttgttctacaaacatccc |
220 |
Q |
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| T |
56315915 |
taaccaccaccaccatttagctaagagggatttattaaattaaagagatttaaatccttaacccctaaactgccacaatcctttgttctacaaacatccc |
56315816 |
T |
|
| Q |
221 |
cccatttcactcacaaaattttacgattaccaattgtcccaccctaaagaaaacatctctgaatttgaataatcattttccacacatgcatttcgaaaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
56315815 |
cccatttcactcacaaaattttacgattaccaattgtcccaccctaaagaaaacatctatgaatttgaataatcattttccacacatgcatttcgaaaaa |
56315716 |
T |
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| Q |
321 |
gaacatatagaaagttggaattgaaccaagaaccaaattgatcaaaaccactctccctcccaaactaacatacttattctgccaaaagcccaacctcctt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
56315715 |
gaacatatagaaagttggaattgaaccaagaaccaaattgatcaaaaccactctccctcccaaactaacatacttattccgccaaaagcccaacctcctt |
56315616 |
T |
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| Q |
421 |
tcaattgctttaaccaccgagtttgaagttgatgat |
456 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
56315615 |
tcaattgctttaaccaccgggtttgaagttgatgat |
56315580 |
T |
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