View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15388_low_7 (Length: 263)
Name: NF15388_low_7
Description: NF15388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15388_low_7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 41482773 - 41482522
Alignment:
| Q |
12 |
aattctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtcgcaaaacggacagcgatacgtggaatcagagattttgagcttgtcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41482773 |
aattctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtcgcaaaatggacagcgatacgtggaatcagagattttgagcttgtcc |
41482674 |
T |
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| Q |
112 |
ttgtagtaatcatccttcaggtctttaaaatatctacgcctgtagtactccaaatctgattcacgagcctgttctgattttttgtacatctgaaaatgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41482673 |
ttgtagtaatcatccttcaggtctttaaaatatctacgcttgtagtactccaaatctgattcacgagcctgttctgattttttgtacatctgaaaatgaa |
41482574 |
T |
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| Q |
212 |
aatcataaaatcaattcaaaataagttgcaaaacaaatagcttgtacataaa |
263 |
Q |
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| T |
41482573 |
aatcataaaatcaattcaaaataagttgcaaaacaaatagcttgtacataaa |
41482522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 40749978 - 40749737
Alignment:
| Q |
12 |
aattctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtcgcaaaacggacagcgatacgtggaatcagagattttgagcttgtcc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||| |
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| T |
40749978 |
aattctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtagcaaaatggacagcgatacgtcgaatcagatattatgagcttgtcc |
40749879 |
T |
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| Q |
112 |
ttgtagtaatcatccttcaggtctttaaaatatctacgcctgtagtactccaaatctgattcacgagcctgttctgattttttgtacatctgaaaatgaa |
211 |
Q |
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| T |
40749878 |
ttgtagtaatcatctttcaaatctttgtaatatctgcgcttgtagtactccaaatcagattcatgagtctgttctgattttcggtacatctgaaaatgaa |
40749779 |
T |
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| Q |
212 |
aatcataaaatcaattcaaaataagttgcaaaacaaatagct |
253 |
Q |
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| T |
40749778 |
aatcataaaattaattccaaagaagttgctaaacaaatagct |
40749737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 41475718 - 41475513
Alignment:
| Q |
13 |
attctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtcgcaaaacggacagcgatacgtggaatcagagattttgagcttgtcct |
112 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41475718 |
attctggaagcatgtctcaatacatcactcaaagagtagtaatccttgttgtagcaaaacggacagcgatacttggaatcagagattttgagcttgtcct |
41475619 |
T |
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| Q |
113 |
tgtagtaatcatccttcaggtctttaaaatatctacgcctgtagtactccaaatctgattcacgagcctgttctgattttttgtacatctgaaaatgaaa |
212 |
Q |
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|||||||||||||||||| ||||| | ||||||||| | |||||| || |||| || ||| ||| |||| |||| ||||| |||||||||||| | | |
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| T |
41475618 |
tgtagtaatcatccttcaagtcttcataatatctactctcgtagtattcataatccgaatcatgagtatgttttgatcttttggacatctgaaaataaga |
41475519 |
T |
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| Q |
213 |
atcata |
218 |
Q |
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|||||| |
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| T |
41475518 |
atcata |
41475513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 16410007 - 16410247
Alignment:
| Q |
13 |
attctggatgcatgtctcaatagctcactcaaagagtagtagtccttgttgtcgcaaaacggacagcgatacgtggaatcagagattttgagcttgtcct |
112 |
Q |
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||||| || ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
16410007 |
attcttgaagcatgtctcaataactcactcaaagagtagtaatccttgttgtagcaaaacggacaacgataagtggaatcagagattttgagcttgtcct |
16410106 |
T |
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| Q |
113 |
tgtagtaatcatccttcaggtctttaaaatatctacgcctgtagtactccaaatctgattcacgagcctgttctgattttttgtacatctgaaaatgaaa |
212 |
Q |
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|||||||||||||||||| ||||| ||||||||| | |||||| || |||| || ||| ||| |||| ||||||| ||||||||| |||| | | |
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| T |
16410107 |
tgtagtaatcatccttcaagtcttcgtaatatctactctcgtagtattcataatcagaatcatgagtatgttttgattttctgtacatctaaaaacaaga |
16410206 |
T |
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| Q |
213 |
atcataaaatcaattcaaaataagttgcaaaacaaatagct |
253 |
Q |
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||||||||||||| || ||| || |||| | |||||||||| |
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| T |
16410207 |
atcataaaatcaactccaaagaaattgctacacaaatagct |
16410247 |
T |
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